The Dragon Wars of Equestria
Prologue: It happened with a beanstalk
Equestria is in ruins. A beanstalk grows in the middle of town, no one knows where it came from or why it's here, but we found out soon enough.
An outside force threatens equestria's dragons and plans to put the breed into extinction to purify society.
Twilight tried to protect Spike, then they mysteriously vanished. Applejack ran off into the everfree forest after the death of Big Mac and left Apple Bloom on the farm. Rarity, Dashie, and Fluttershy joined the resistance to protect the dragons. The royal sisters flew off to find help. Some ponies fled for a distant countries, others joined the war. Radiation plagued the land.
I was left alone, taking care of Apple Bloom, around a stallion sickened by the radiation. Alone in Ponyville.