The Equestrian War

by Harmonator

Rating: teen
Tags: Tragedy, Alternate Universe, Sad, Dark
Length: 4589

Nopony ever expected this to happen, but it did.

Equestria used to be a beautiful country to live in, and everypony used to live in peace as well. Nopony ever expected this to happen, but it did. This is a containment of events of what happened that caused our country to end up in ruins.

Published 1970-01-01 00:00:00 UTC
Last updated 2015-06-05 21:55:23 UTC

Chapter One - Origins

     My name is Twilight Sparkle, I was once a royal Princess who tried to protect my subjects from harm.  That was what I did before the takeover.  Everything written in here is a copy of what happened.

     It started out as a warm summers day in Ponyville, the sun was shining and everypony was happy.  I was glad that everypony had calmed down after a bad incident that had occurred.  A few months ago, Equestria was attacked by Lord Tirek, a centaur that escaped from Tartarus to take over Equestria.  Me and my friends managed to stop him before he gained control, and we saved Equestria from harm once again.

     I was out practicing flying that day with one of my good friends, Rainbow Dash, she was the pony who taught me everything there is to know about flying.  I was flying pretty well already, but according to Rainbow Dash, there were still some things I needed to work on.  I knew how to get myself into the air and fly in any direction I wanted to, but I still had trouble making quick sharp turns.  But on that day, I managed to make all my quick turns correctly without any mistakes, I even managed to land correctly as well.  Rainbow Dash and I were going to go to Sugar Cube Corner and meet up with our other friends, until the invasion began.

     I just happened to be looking at the sky as we walked, and over the peek of a mountain just outside of Ponyville, I saw small black dots heading towards us.  At first I thought that they might be parasprites, but they were black, and parasprites are all sorts of colors, so they couldn't have been parasprites.  Rainbow Dash didn't seem to notice, she was too busy talking about the proper way to fly in heavy winds.  As they came closer, they started to look more pony-shaped,  yet they still looked somewhat odd.  After a while, the ponies all around us began to notice these strange creatures heading towards us.  We watched carefully, and as they came closer, we began to realize what these creatures were.  They were changelings, creatures that can change their appearance to match that of ponies.  When we realized what they were, there was chaos in the streets.  Some ponies began to panic and hid in nearby buildings to protect themselves, while other ponies were ready to stand and fight them off.  The alarm went out, quickly all the doors and windows were shut and barred.  Ponies were rushing everywhere to find cover, and some ponies looked around for any weapons they could use.

     I saw the look in the changelings eyes, they were out to kill us all, they had come back for revenge.  That's when I realized that we were in danger, and that we needed to find cover fast.  I told Rainbow Dash to follow me to Sugar Cube Corner, but she had anger in her eyes and she was ready to strike at the changeling army.  I wasn't going to leave her there to die, so I grabbed her by the tail and ran as fast as I could over to Sugar Cube Corner.  The good thing was, it wasn't barred up yet so we were able to get inside.

     When we got inside, Rainbow Dash started yelling at me, saying that she didn't need to be saved, and that she could have fought them off by herself.  I ignored her and started to search in the store for my friends.  I thought that maybe they got here before the changelings attacked, and stayed here for cover, but there was nopony else in the store except for me and Rainbow Dash.  After a while, other ponies started coming into the store to hide out.  Some of them I knew, and some of them I didn't.  One of them was Cheerilee, she was the teacher for the Ponyville Schoolhouse.  With her was Scootaloo, and when she saw Rainbow Dash, she ran over to her and they hugged each other for a while.  Among the rest of them was Apple Bloom, who was my friend Applejack's younger sister, a Pegasus named Thunderlane, and an Earth pony named Rose.  I didn't really know Thunderlane and Rose all that well, but they did seem like decent ponies.

     I went over to Apple Bloom and asked her if she knew where her sister was.  She told me about how she was out playing with her two other friends, and then the changelings attacked.  She and Scootaloo got separated from their other friend, Sweetie Belle, who was the younger sister of my other friend, Rarity.  They managed to escape and came to Sugar Cube Corner.  She had no idea where her sister was.  Apple Bloom was quite upset and scared, so I decided that I would look after her until we found her sister.

     After we all calmed down, we decided to come up with a plan.  They all looked to me to be the one to tell them what to do.  I knew that we needed to board up all the doors and windows so the changelings couldn't get in.  But after I told them what to do, ponies began to become suspicious of each other.  We needed to make sure that nopony was disguised as a changeling.  Luckily I had a spell that could take away a changelings disguise.  So, we lined everypony up and I checked them, and thank goodness, nopony in there was a changeling.

     It was a horrible experience, from outside the store we could hear ponies screaming for their lives.  As time passed, we began to hear less and less screaming, and then finally everything outside was quiet.  For once, we thought that we were all finally safe, until we heard scratching noises at the doors and windows, they were trying to break in.  I told everypony that we had to get out of the store, or else they were going to break in and kill us.  I thought up of a plan, that we would hide out in the Everfree Forest, it was thick forest and the changelings wouldn't be able to find us.  I told Cheerilee and Rose to take Apple Bloom and Scootaloo to the entrance of the Everfree Forest, I told them that I would escort them there, so I could protect them from the changelings.  Rainbow Dash and Thunderlane would fight off any changelings that tried to attack us as we try to leave.  Everypony seemed satisfied with the plan, so we all looked around in the store and gathered whatever supplies we needed.  We were going to escape out the back door, because almost all of the changelings were at the front.  I asked if everypony was ready, and we unbarred the back door, and I stood there ready to open the door, my hooves were trembling, and I was sweating badly, I counted to three, and I threw open the door.

     Cheerilee, Rose and the children ran as fast as there legs could carry them, I followed them, and I look back to see Rainbow Dash and Thunderlane fighting them off.  As I ran, I looked around at the little town that I used to call my home, everything was destroyed, buildings of ponies homes were burned to the ground, there were dead ponies lying in the streets, the town that only a few hours ago, was full of peace and happiness, was now a place full of anguish and despair, and I had begun to worry that maybe my other friends didn't make it.  I looked and saw that my castle was destroyed also, and I began to grow hopeless, as my home crumbled to the ground.  I still kept an eye out for any survivors, but we were unlucky to find any.  Rainbow Dash had caught up with us, but Thunderlane wasn't with her.  I asked her where Thunderlane was, and she told me that Thunderlane wanted to go and find his younger brother, Rumble. I could only hope that Thunderlane found his younger brother, and that they were safe, I also hoped that my other friends were safe and sound.

     We got to the Everfree Forest, and we ran inside.  I told the group to follow me because I knew of this open area that was a good spot for us to rest.  We got there, and everypony was out of breath from running.  I went around and made sure that they were all okay.  We had a few cuts and bruises, but other than that we were fine. I asked Apple Bloom if she was okay, she told me that she was fine, and that I shouldn't worry about her that much.  I couldn't help it.  I worried about her, it can't be easy being in a situation like this, without your sister there to protect you.  So that's why I needed to be there to protect her.

     We knew that we were going to be there for a while, so we began making a camp. We didn't have tents to pitch up, so we had to use blankets and pitch them up with sticks we found in the woods.  For beds, we used blankets stacked on top of each other and laid them out for patting.  It was getting dark, and we managed to light a fire.  In the night, the only thing we could hear was the wind, and it made us feel as if we were truly alone.  But that wasn't true, we had each other to keep us safe.  Rainbow Dash and Scootaloo sat next to each other, I heard Rainbow Dash tell Scootaloo not to worry, and promised her that this would all be over soon.  I hope that what she said was true.  Cheerilee and Rose sat near each other, and they managed to strike up a friendship.  I sat next to Apple Bloom, and she looked very worried and scared.  I tried to reassure her, and say that everything would turn out fine in the end.  She told me that she was worried about her family.  I told her that I was sure that wherever they were, they were safe.

     We sat there silent for a moment, until we heard something coming towards us in the woods.  I told Apple Bloom to get behind me.  Rainbow Dash and I were ready to strike at the uninvited guest, until it was revealed to be Thunderlane.  We all managed to calm down.  Thunderlane told us that he had no luck in finding his younger brother.  We made him a shelter to stay in and he went to bed early.

     I told the group that we might be the last hope to save Ponyville.  So I proposed that tomorrow we would go into Ponyville and look for any survivors.  We would create an army, and we would take down the army of changelings.  Everyone agreed to that plan.  We stayed up a little longer, and then we all went to bed.  Rainbow Dash and Scootaloo shared a bed with each other, Cheerilee, Rose, and Thunderlane had there own beds, and me and Apple Bloom shared the same bed, I asked if she wanted to sleep by herself, but she said that she would feel better if I slept with her.  So I told Apple Bloom goodnight, and we fell asleep.

     I was asleep until, Apple Bloom woke up in the middle of the night.  She informed me that she needed to go to the bathroom.  She was only gone for about a minute.  Then I heard a high-pitched scream.  I rushed out of bed, and I saw in the darkness the lifeless body of Apple Bloom, and Thunderlane was standing over her.  I became enraged, and I pounced upon Thunderlane and I yelled at him with tears in my eyes asking why he hurt her.  Then I realized that this wasn't the real Thunderlane, I performed my spell, and it turned out he was a changeling the whole time.  The changeling disguised as Thunderlane must have followed us into the forest.  I rushed over to Apple Bloom, I examined her as much as I could, and it turns out that the changeling had attacked her and broke her neck.  Apple Bloom was dead.  I had failed to keep her safe.  I sat there holding her body in my arms all night long, sobbing bitterly.

Chapter Two - Gone

     It had been about two months after Apple Bloom's death, and it had left us all with great despair.  Ever since Apple Bloom had died, we became extra careful when letting new survivors in the group.  From then on, every survivor had to be checked to see if they weren't disguised as a changeling. The group was beginning to lose hope, and if we didn't do something fast we were all going to perish.  The last plan we had was to gather an army, but for the past two months, the changelings were growing by the numbers and our group at that time was in no shape for a fight.  We did manage to sneak into town a few times and we found some survivors.  One of them was my assistant, Spike, he was a baby dragon whom I had raised ever since he was a hatchling.  Spike was hiding out in an abandoned store, when we found him he was nearly on the verge of death, but we managed to nurse him back to health.

     We also found Applejack and her family, only Granny Smith was not with them.  Applejack and her brother, Big McIntosh, hid themselves in their barn.  Big Mac had nearly broken his back after being crushed by falling rubble, and when we found them, he could hardly get up, so I helped Applejack carry him back to our base.  Applejack was not injured, but she was quite upset after losing her grandmother.  I could not bare the thought of telling them about what happened to their little sister.  I had to be the one to tell them, because I was the one who failed to keep their baby sister safe.  When I told them, they both became overcome with grief, and they hardly spoke to us afterwards.

     Now two months has gone by, and we haven't had much luck in finding survivors.  Thankfully, we haven't lost anypony, and we are starting to regain some hope, but it's not safe to go out yet.  The whole experience felt like as if we are waiting out a storm, and that it was going to clear up soon, or that this situation we found ourselves in was nothing but a horrible nightmare.  I thought about the possibility of this being nothing but a dream, but the truth of the matter was, that it was all real. I also had to except that this would definitely not be over anytime soon.

     I began thinking about my family, about my big brother, Shining Armor, and about my mother and father.  I could only hope that they were safe as well.  I also thought about my other friends, and wondered where they were, and if they were safe.

     We all sat silently around the camp fire, as we kept our thoughts to ourselves.  There were now eight of us in the group, me, Rainbow Dash, Scootaloo, Rose, Cheerilee, Applejack, Big Mac, and Spike.  We lost Thunderlane when we tried to escape Ponyville, and a changeling disguised as him came back in his place.  When we went back into Ponyville a few times, we searched for Thunderlane, but we found no trace of him.

     I look over and see Rainbow Dash comforting Scootaloo, this whole experience can't be easy on her.  I'm just glad she's got Rainbow to take care of her.  She's always looked to her as her big sister, and as far as I know, she doesn't have any other family members.  Rose and Cheerilee just sat and stared at the burning flames of the camp fire.  Big Mac went to bed early, saying that his back was hurting and that he needed to lay down.  Applejack was the first one to break the silence.

     "So, what's the plan?" she asked unexpectedly.

     It took me a while to realize that she was talking to me, "What?" I replied, a little confused.

     "You know, what are we gonna do?  How are we gonna get into Ponyville?  We can't just stay here in the forest."  Applejack explained.

     "Applejack, we are in no position to do anything at the moment, we're all hurting, we need more time." I replied.

     "Shoot Twilight, it's been two months, what are we gonna do, just wait here for the changelings to come and attack us?  We need a plan."  Applejack said with the sound of encouragement in her voice.

     Although I still felt like we weren't ready to go and look for more survivors, Applejack did have a point, we couldn't just sit there and do nothing.  If there were more survivors out there, we may have been their only hope for survival.  I thought the matter over for a second or two, and finally said.

     "Alright, we'll go.  We leave first thing in the morning.  But I don't want anypony dragging around tomorrow, so everypony make sure you get some good rest tonight."  And with that, we put the fire out and everypony went to sleep. Everypony else was sleeping, except for me.  All I could do was look up into the darkness and wonder why this all had to happen to us.  I tried not to think about it too much, so I just turned to my side and closed my eyes.  But then another thought went through my mind, I began to recall that horrible night of when I saw Apple Bloom's dead body on the cold ground. I barely slept that night, all I could do was cry.

     The next morning, everypony was up and about getting ready for our little trip into Ponyville. There was only one who was not up, and that was Spike. He was always the kind to sleep in. I decided that I had better go and wake him up, so I went over to where he was sleeping.

     "Alright Spike, get up, it's time to go." I said, nudging at him to get up.

     "I'm not going." he responded.

     "Why not?  We need you Spike, we need everypony's help, now please get up."

     "You didn't seem to need me before." Spike said as he rolled back on his side, facing away from me.

     "What are you talking about Spike? What do you mean by that?" I responded.

     "Just exactly what I said, you didn't need me before, and you don't need me now!"

     "Spike, I don't know what you're talking about, but I need you to come with us, we need your help, in this tragic situation we need all the help we can get."

     "Then why didn't you try to save me!?" he screamed at me with tears in his eyes.

     "Spike, what do you mean why didn't I try and save you?"

     "You know what I mean!  You left me to die in that abandoned store!  I stayed there for two months living in fear that I could die at any second, and you weren't there for me!" Then Spike began sobbing and started choking through his tears.  "When this whole mess broke out, you didn't even attempt to try and find me.  You didn't look for me, so you obviously didn't need me, so why do you need me now!?"  I stood there speechless, as he was crying, not knowing what to say.  "I thought you loved me Twilight, I thought you cared for me, I thought you would be there for me, but you weren't."

     "Spike, I have always loved you, and I will always love you, don't ever think that I don't care for you because I do, I really do."

     "Then why didn't you try to find me when the attacks started?"

     "Believe me Spike, I wanted to find you, and all of my other friends, but I had to find the group safety first. I know I could've done better, and I know you probably hate me for abandoning you, but I never wanted to. I'm sorry Spike, please forgive me, I'll protect you from now on, okay?" I said to him as I wiped the tears from his eyes.

     "Okay." and with that we hugged each other and we cherished that moment, for we knew what we were going to walk into when going back to what was left of Ponyville.  With that, we gathered up anything that we needed and headed on out.

     As we stepped out from the Everfree Forest, I looked over at Fluttershy's abandoned cottage, still just as torn apart as the first time we saw it.  On our first trip back into Ponyville, we looked in the cottage to see if we could find Fluttershy, but there was no trace of her to be found.  All of her animal friends were gone, and the whole interior of her home, which was once very warm and inviting, was now in shambles. Broken pieces of furniture laid scattered across the floor of her cottage, as if something came in uninvited, and tried to attack her.  I could only hope that she somehow managed to get away.

     We moved on into Ponyville, or what was left of it.  With each visit into the small little town we used to call home, the town just seems to be decaying more and more.  But something about this visit is different, there are no more changelings.  Where did they all go?  As far as we all knew, this invasion only occurred in Ponyville, unless the changelings are taking over other parts of Equestria as well, which the very thought of scares me to death.  But we stopped them once when they took over Canterlot, and I am positive that we can do it again. However, the only difference between the invasion that happened in Canterlot and the one happening right now, is that the changelings have become more...ruthless.  I found that out when I saw what they did to Apple Bloom.  Why was I so stupid to just let a changeling disguised as Thunderlane slip under my nose so easily.  It's my fault Apple Bloom's dead.  It's all my fault.

     "Hello!" Rainbow Dash yelled, interrupting my inner thoughts. I immediately covered her mouth.

     "Rainbow, what are you doing? Do you want the changelings to know where we are?" I told her in a quiet whisper. We stood there silently for a moment, waiting for a group of changelings to attack us at any second.  But nothing came.

     "What's your problem Twilight? I was calling to see if there was anypony around." Rainbow said as if she felt offended.  But right now I was more worried about where all the changelings were. It didn't make sense.  Did they just leave?  I looked around and saw that there was not a changeling to be seen. Come to think of it, where did all the bodies go? When we last left Ponyville, there were bodies of ponies lying in the street, and now all of a sudden they've all just disappeared.  Did the changelings do something with the bodies before leaving?

     "W-Where did all the changelings go?" Rose asked, shaking a little.

     "I don't know, but I say good riddance!" Rainbow said, making sure that everypony heard her.

     "Well this is good news y'all! If there are no more changelins', then that must mean that everypony left in town must of fought them all off!" Applejack stated.

     "Well if that's the case, then where is everypony?" I said turning to Applejack, and then it suddenly dawned onto everypony that not only were all of the changelings gone, but all of the ponies as well.  No changelings.  No bodies.  No ponies.  This was all getting too strange, and it was making everypony feeling uncomfortable.

     "Alright, here's what we'll do, we have to check all of Ponyville, there have to be survivors out there.  Cheerilee, Rose, you two will go to the Ponyville Schoolhouse and look.  Rainbow Dash and Scootaloo, you'll go and check Sugarcube Corner.  Me and Spike will go from house to house looking for survivors.  Applejack and Big Mac, you two go and scope out Sweet Apple Acres for anypony.  When we're all finished looking, we'll all meet up at Sweet Apple Acres.  Everypony got that?" I said trying to be as hopeful as possible.

     "Yes ma'am." Everypony said before taking off.  Once everypony had left, it was just me and Spike.

     "I think we should start looking in the town hall, to see if anypony is in there, and then after we look there, we'll start in town square and then just expand to the rest of town, alright." I said to Spike, making sure to see if he was listening.

     "Yeah, I got it." I began to walk away, until I felt him tug on my tail.  "Twilight, I'm sorry I yelled at you, I was just under a lot of stress."

     "It's alright Spike." I said giving him a reassuring smile.

     We searched the town hall to find just as torn apart as the rest of Ponyville, and seeing as how all the changelings were gone, I saw no reason to not call out to see if anypony was there.

     "Hello!" I yelled, hearing my own voice echoing from the walls on the inside.  There was no response.  We searched and searched but we could find nopony.  This concerned me because it seemed kind of odd that nopony would be hiding out in here.  I thought that the town hall would be the first place everypony would go.  We checked the whole interior of the town hall and there was no sign of life.  We then moved out into the town square.  We double checked every cottage. We yelled and shouted, just waiting for any kind of answer from anywhere, but it never came.  There was not a living soul left in these cottages.  They were all abandoned.

     "Everypony, they're all...gone." Spike said beginning to tear up.

     "No, that can't be true Spike." I said wiping away his tears.  "The others had to have found some survivors, they just had to.  Come on, we'll go to Sweet Apple Acres and meet up with the rest."  So with that, Spike and I made our way to the farm, where we could see everypony standing by the barn waiting for us, but there was nopony else with them.  I ran to them feeling almost out of breath.

     "Didn't you find anypony else?!" I yelled, still gasping for air.

     "I'm mighty sorry Twilight, there was nopony at the Schoolhouse, nopony at Sugarcube Corner, and nopony here!  I don't know what happened, but it looks everypony we knew and loved are gone! They're all gone."  Applejack said before she began choking through her tears.  I could feel myself beginning to cry as well.  There was no way that this could happen.  There was no way that those changelings managed to kill everypony left in Ponyville.  It was just impossible.

     "Help! Can anypony hear me?! Please answer me!" I shouted as I ran all around the farm.  I must have looked like a lunatic running around screaming at the top of my lungs, but I just couldn't believe that they were all gone.  I finally gave up, I sat down in the dirt and started crying again, while everypony else just stood in silence.  Then all of a sudden I heard something very faint. I couldn't quite make out what it was, but I could hear it.

     "Do any of you hear that?" I asked the rest of the group as I stood back up.  They all began agreeing with each other as they listened and heard it as well.  It was so faint, and yet so clear.  It took awhile for me to make it out, but it sounded like somepony crying.  Not so much as sobbing, but it sounded more like, a baby crying.