Twilight & Dash are sent to Japone on a mission to get rid of a ghost haunting the house of a relative of Applejack's. But they soon find that Tails, TJ, Fireblaze, and Christian have stowed away in the suitcases to join their adventure! But they find out that Trixie and her goons have followed them there in order to steal the mystical Muta-Stones!! Can our heroes stop them from carrying out their sinister plot?

Based on the TMNT 2-Part OvA from 1996.