The Darkest Hour in Equestria

by Terminator

Rating: teen
Tags: Sad, Spike, Rainbow Dash, Tragedy, Starlight Glimmer, Adventure, Princess Celestia, Twilight Sparkle, Gore, My Little Pony: Friendship is Magic, Dark
Length: 1958

With her friends gone and one raging out of control, Twilight must find the Legendary Flames to save her friends and Equestria and find at the truth about her past. What Twilight finds along the way is something she never expected.

Equestria has been at peace after the defeat of Tirek 2 years ago. But now, an old enemy has returned and taken control of one of the Elements of Harmony. With Princess Celestia defeated, her friends missing or possibly dead, and Equestria nearly in ruins, Twilight Sparkle is forced to do something she really doesn't want to do. Fight against her closest friend. Will Twilight be able to defeat this "Soul Eater"? Just what is this mysterious dark armor her enemy wears? And just who is her new enemy and old friend? The Legendary Flames are about to return to their masters.

Not a crossover with the anime Soul Eater

Published 2015-05-21 23:00:02 UTC
Last updated 2015-05-21 23:00:02 UTC

A Shadow Appeares

A Month Earlier

Clear blue skies with no clouds in site. Celestia's sun has just risen into the sky, bathing Ponyville in its warm sun rays. Only very few pony's was up and about this early in the morning, one of them happens to be a cyan Pegasus with rainbow color mane and tail. Her cutie mark was a cloud with a rainbow lightening bolt shooting out of it. Her magenta color eyes was almost always full of life and energy. Rainbow Dash flew through Ponyville to make sure there was no bad weather in site. With no weather to disrupt the schedule for the week, Dash let out a great sigh of relief and rested upon a cloud.

"Oh man, I woke up early in the morning for nothing," complained Rainbow, "Now I have nothing to do."

Rainbow looked through the streets of Ponyville to see something to do. Her eyes eventually fell upon a shop for papers and quills and spotting something very familiar exit the shop, or rather-somepony. A lavender alicorn came out of the shop along with a purple dragon named Spike.

"Twiley?" Rainbow called out.

Twilight looked up to the sky upon hearing her nickname and spotted her rainbow-colored friend. "Oh, good morning Rain," Twilight smiled, "I didn't think I see you out so early in the morning. I expected you to sleep till at least noon." Rainbow is like the only pony, beside her brother Shining Armor of course, who calls her "Twiley". She and Rainbow have been really close friends since the Discord incident, though they're still close to their other friend's, unknown to Rainbow, Twilight has seen her like the sister she always wanted.

Rainbow scoffed. "Yeah, well I had to take a look at the weather to make sure everything is in order, I have a job you know," she leaped from the cloud and landed on the ground near the alicorn. "Morning, Spike. What are you guys doing in town so early in the morning?"

"Twilight ran out of studying materials just yesterday, so we're restocking... again," Spike responded slightly irritated. "I mean this is like what, the second time this week? She just doesn't know how to put the quill."

"Egghead," Rainbow chuckled.

"Hey!" Twilight groaned. Rainbow started laughing with Spike joining her. Twilight, no matter how irritated she is with Rainbow, started laughing lightly with them. She just can't remain angry with her for too long.

Just when they settled down, a extremely cold chill enveloped the three of them, leaving them shivering like crazy. "Whoa, what the hay was that?" Twilight exclaimed still shivering. "I don't know but that was really strange." Spike answered, "That wasn't the wind, was it, Dash?"

"No, it wasn't the wind because we are the only one's that felt it," replied Dash as she looked around her surroundings. Indeed, no other pony has felt the cold chill and looked at them with confusion. "Why are we the only one's?" questioned Twilight.

A shadow was hidden in a nearby bush, magic active through her horn. The unicorn smirked, "Hmm, still too weak to control the both of them at the same time. I guess I'll just have to take one of them instead and weaken the other, but the question is, each one?" Her eyes narrowed, thinking deeply. Suddenly her eyes widen, a devil smile working its way up her face. "Ah yes, that's perfect. First, I'll have to weaken Twilight so she'll be more easier to control and what better way to weaken her by using the next powerful Element. She'll be resistant at first but she eventually fall under my control easily. Those two don't realise that they are the Legendary Flames. I must control them before their powers return." The unicorn had her eyes fixed on Dash before she teleported away, her plan in motion.

Rainbow shucked her head, she could of sworn she heard a dark laugh in her head. "You alright Dash?" Twilight asked with concern. She just felt a dark energy in Ponyville but it just disappeared in thin air. Rainbow nodded, a headache working its way up in her head, " Yeah, just a headache." And also a slight pain where my heart is, Rainbow thought not want to worry Twilight and Spike. "Listen, I'm going to go home and rest. For some reason, I just killer headache, I'll see you guys later, okay?" With that, Rainbow took off to the skies, her headache flaring.

Spike wore a worried expression, "Twilight, I'm really scared. I feel something bad is about to happen." Dragons has this instinct that tells them that something big is about to unfold. But she wasn't listening, what was that dark energy I felt? For some reason it felt familiar but I can't put my head around. She put her hoof on her forehead, suddenly developing a headache. "Spike, let's go. I really don't want to stay out here any longer." Spike, unaware of Twilight's pain expression, replied " You and me both Twi."

Rainbow couldn't fly straight with the headache she had. Egh, this headache is really starting to hurt real bad, I can't focus. She landed on a cloud, trying to reduce the pain. Approaching behind her is a dark cloud, speeding to reach the downed Pegasus. Rainbow turned around just in time to be caught by the mysterious dark cloud. " What the- What's going on? I can't move!" Rainbow tried desperately to break out but the cloud had its death grip on her, pinning her on the she was on. The matter made its way around her, surrounding her with its misty form. It soon became hard to breath and her vision started to black out as the mist almost completely engulf her entire body. Rainbow's struggles started to cease when she felt her strength leaving her. Just before she fainted, she whispered "Help... Twilight." Then her world blackened out.

"Help... Twilight." Twilight gasped. A sharp pain just entered her heart and cried out in pain. "Twilight, are you alright? What's wrong?!" Spike said with a panicked voice. Twilight couldn't hear Spike as those two words kept repeating in her head. "Help... Twilight." What is going on? Is Rainbow in danger? Why can I hear her voice in my head?

"Twilight Sparkle!" She heard her name right above her. She and Spike looked up to see Spitfire, Captain of the Wonderbolt's Academy, hovering above carrying an unconscious Rainbow Dash.

"Oh sweet Celestia, what happened to her?!" Exclaimed Spike. Rainbow seemed fine but her eyes were closed and looked like she was in intense pain. "I do not know," answered Spitfire, landing in front of them and gently put Rainbow on the ground, "I just happened to fly by when I saw Rainbow get hit with a dark cloud. It engulfed her and then went crashing down. Luckily, I happened to catch her before she hit the ground but for some reason she in pain."

"Take her to the Ponyville General, maybe someone there can figure out what's wrong," Twilight inclined, looking scared out of her mind, what is this? I can sense dark energy animating from her. It's the exact energy I sensed earlier, what's going on?! Spike put his claw on Dash's forehead and almost immediately retreated his claw, "whoa, she burning up fast." " I better go, she barely breathing," Spitfire then scooped Rainbow in her arms and took off flying towards the hospital. The two of them watched as Spitfire disappeared in the distanced. "OK Twilight, what did you sense within her?" Spike asked, already knowing she knew. She sighed, " I don't know. It was something... evil and dark. I sensed it earlier but it was nothing I ever sensed than before." " Do.." Spike seemed to hesitate on the question, "do you think it might have been... Tartarian magic?" he whispered the last two words.

Twilight looked shocked, It couldn't be, Tartaric magic is so advanced that not even Celestia could handle its dark power's without losing her reason. But for reason... it made sense. " I don't think it is, all I know that its some sort of dark power. Maybe Celestia will know. I just hope Plasma will be alright, I'm really worried." Twilight went on ahead towards the hospital.

"Plasma? Who's Plasma?"

She halted, "What?" " You said Plasma, who's that?"

"I... Why did I say Plasma? Who's that? Why is that name so familiar?

Author's Note

I am very proud of me and my cousin's work. I hope you like it so far.

EDIT
Made changes.

Prologue

In the middle of desert wasteland, a tumbleweed drifted passed a demolished sign. What used to be a beautiful sign once said "Ponyville", now in pieces the once proud sign now says "Ville". Standing next to the sign, there was a pony, looking at the once proud and beautiful town crumbling before her. This particular pony was a young alicorn actually, with a violet coat and purple with magenta line in the middle mane and tail. Her cutie mark was a six pointed purple star with small white stars surrounding the purple star. Her wings hang loosely on either side a her body and her violet eyes was filled with tears. The alicorn's name is Twilight Sparkle.

Twilight looked over the town, remembering its beauty and energy, now filled with death and dust. So many casualties and destroyed homes.

"How could all this happen," whimper Twilight.

Flashback

A fireball appeared in the tinted orange sky and shot towards town hall.

Just it was about to hit, a purple shied appeared around town hall, protecting it from the fireball as it made contact with the shield, destroying the shield in the process but saving town hall and all its survivors who took refuge inside town hall.

Twilight appeared in the scene, tired and weak from using a lot of her magic, looking through the orange tinted and dark cloud cover sky for the "Soul Eater". There was nothing or anypony in site but a a dark laugh can be heard above the clouds. Twilight flared her wings and took off to the sky in hopes to find the "Soul Eater". When she appeared above the clouds, whoever cause all this destruction was already long gone.

In despair, Twilight shouted, "why are you doing this?!"

Flashback finished

"How could she do this," exclaimed Twilight.

Right in front of her, a unicorn appeared through teleportation. This unicorn had a pink coat with light purple with aqua lines mane and tail. Her cutie mark was a four pointed purple star with a aqua wave shooting up. Her usual light purple eyes is now bloody red. This unicorn name is Starlight Glimmer.

"Starlight Glimmer? What are you doing here," Twilight said angerly.

Starlight chuckled darkly, "You really want to know what happened to your closest friend and why she's doing this," flaring her horn to life, a green tinted orb appeared between them, "Watch and learn Princess Twilight Sparkle," putting much venom when she said "Princess". The Green tinted orb started to glow til it was so blinding that Twilight had to shield her eyes, putting her forehoof up to shield her eyes.

"What do you think your doing Star-" Twilight was cut off when she fell down to the floor,into a deep sleep, dreaming of what happened in the last month.

"Oh, you will see soon enough,"Starlight said, laughing a laugh that can be misstaken to be a laugh of the devil.

Author's Note

To all those viewers Thank you. You have inspired me to make this story so enjoy and review and please no flames.