Phantoms of the Past

by Frost Vortex

Rating: teen
Tags: Twilight Sparkle, Main 6, My Little Pony: Friendship is Magic, Dark, Alternate Universe, Thriller, Original Character, Mystery, Spike
Length: 1931

When Princess Twilight Sparkle is out of town for the week, a sinister force originating from ages past strikes the defenseless town of Ponyville.

You are our only hope, Twilight Sparkle. Do not disappoint us.

Princess Twilight Sparkle was just going to Canterlot on royal duty, therefore leaving Ponyville defenseless. Who knew that things would go wrong and an ancient force from the past would try to conquer Ponyville in the time that she's gone?

It isn't until she receives a strange letter from her friends that her suspicions grow, and she makes the trip back to Ponyville only to discover the shocking truth: the town is in ruins and everypony has disappeared, leaving her the dangerous objective of finding them all before it's too late.

Meanwhile, while she embarks on this desperate journey, she doesn't realize her every movement is being watched from the shadows...

Credit for the amazing cover art goes to NixWorld. Check out his other masterpieces on his deviantart!

Published 2015-11-03 01:50:01 UTC
Last updated 2015-11-29 02:23:36 UTC

Chapter 0: Prologue

Canterlot Garden
Royal Canterlot Palace

Princess Twilight Sparkle chuckled heartily, her gaze traveling over the multiple-letters-in-one she'd just received from her friends back in Ponyville.

Dear Twilight,

I understand that it's only been four days since you left for Canterlot on royal duty, but apparently the girls and I are missing you dearly already. It's been rather boring here without your usual liveliness, and we went our separate ways after your departure, but we eventually agreed to meeting at Sugarcube Corner this morning to try to kill the boredom a bit. We tried all sorts of games, and even miniature parties on Pinkie Pie's part, but none of them worked. It was hours later that Fluttershy finally recommended sending a letter to you, and immediately we all brightened up and got to work

Hey there, Twilight! Rainbow Dash here, and I'm just saying how boring everything here is without you. I can't even see if the newest Daring Do books are out yet without your, erm, awesome bookworm skills, I guess? Spike isn't really that much of a help either. So yeah, it's been pretty uncool here

Ahem, I'm sorry, Twilight. As you can see, that was Rainbow Dash, who rudely snatched the letter away from me

Oh, c'mon, Rarity! Get a grip, won't you, and just let me finish my part

HIIIII, TWILIGHT! IT'S PINKIE PIE AND I'M SUPER DUPER EXCITED TO BE WRITING TO YOU

Right, really sorry Ah am, Twi. These ponies just don't know when to calm down, don't they? The whole fussin' over here is gettin' pretty annoyin' too. Anyways, Ah just wanted to say that Ah'm missin' ya as well back here. We all are, to be honest

Heyyy! Stop being a meanie, AJ! O-kay, so I missed you a lot here, Twilight! We're all so bored, and being bored is never a good thing, right? Even my Pinkie-style parties couldn't cheer us all up, and you know how I hate frowny faces! Until Fluttershy suggested writing a letter, like I'm doing right now, we... wait, is this really a letter? I mean, a letter's usually written by one pony, and there's like five writing on this one at the same time! Isn't that cool? Maybe I should come up with a new name for it

Gosh darn it, Pinkie. Ya don't wanna know how fast she can write in just a few minutes, Twi. Pretty impressive work she did above, didn't she? She's an odd one, Ah tell ya. What we've been tryin' to say all along is that we really wish yer trip could be shorter, since Ponyville seems so quiet without ya. Even Apple Bloom an' the others want ya ta come back, and that's a big surprise in its own right. Now that they've got their cutie marks and all, they're all runnin' around like chickens in a coop

Oh, hi Twilight. It's Fluttershy here, and I'd just like to say... um, hi?
You are our only hope, Twilight Sparkle. Do not disappoint us.

And just like that, the letter was brought to an end. Bewildered, Twilight frantically scanned the rest of the parchment to see if her friends had written anything else. It was completely devoid of any other writing, to her disbelief; there wasn't even a proper signature! After two more run-downs, Twilight sighed and gave up. It was then that something caught her eye: at the bottom of the letter were faint words, clearly scrawled in a hurry.

You are our only hope, Twilight Sparkle. Do not disappoint us.

Twilight's eyes narrowed as her brain whirled with thoughts. Did her friends write that? If they did, why would the message be so vague and... ominous?

Unless...

She drew in a sharp intake of breath as the pieces clicked into place. I need to get to Ponyville! Now!

Unknown
Ponyville

"Quick, do it! We don't have much time left!"

"Are they here yet?"

"No, I don't see them yet. With the shadows aiding them, we can't do much but wait—"

"THEY'RE HERE!"

"WHAT?!"

"I'm so sorry I failed you all... I thought it would work..."

"Stop blaming yourself for this! None of us wanted this to happen, okay?"

"She's right. It's not our fault and it'll never be. All we can do now is believe in her and hope that she'll make this all right again."

"Guys... if we don't survive this, I just want you all to know that you're the best friends I've ever had in my entire life."

Five mares and a dragon embraced each other in one last hug before their vision gave way to complete darkness.

"YOU WILL NEVER ESCAPE ME!"

Chapter 1: Generosity's Gift

Author's Note

If you haven't read the prologue yet, please do so as it clears up a few things. You'll have more insight into some of the things that I'm talking about.

Chapter 1: Generosity's Gift

Town Outskirts
Ponyville

Twilight Sparkle sank to her knees, taking in the devastating sight before her. After she'd received that mysterious letter from her friends yesterday, she had gathered her things and booked the next train heading to Ponyville. Fortunately for her there was only one more, and thus she anxiously waited out the few hours of the ride, unable to get rid of the sinking feeling within her.

Her worst fears were confirmed as soon as she stepped out into the Ponyville train station and noticed the lack of ponies there - or anywhere, for that matter. The entire station had been abandoned, and an eerie silence had descended upon it, rendering everything so quiet that you could even hear a pin drop. "Umm... girls? Anypony?" she'd called out, only to be greeted nothing in response. Gulping, she quickly exited the train station and made her way in the direction of Ponyville. The entire walk was unsettling, mostly by the quiet that accompanied it; Twilight was developing a growing hatred for the ponies who'd thought that constructing Ponyville's train station a few miles away from the inital town itself was a good idea.

Finally, after what seemed like an eternity, the edges of Ponyville finally came into view. Twilight could see the numerous orchards of Sweet Apple Acres to the far side of the town, noting how the apple trees appeared to be on the verge of death, which further accelerated her panic. It wasn't until she finally focused more on the main town, however, that a gasp of horror escaped her.

Ponyville was in ruins; debris were strewn everywhere, and what houses had once stood tall were now lacking a majority of their exteriors. The only building that seemed to fare much more better than the others was the Town Hall, whose glory was increased now that it was the only intact building amongst the town. Furthermore, not a single pony could been seen, as if they'd all disappeared suddenly. It pained her to see that Ponyville, a town most famous for its bubbling energy and friendly ponies, was doomed to such a disastrous fate. What happened here?

Forcing herself to stop panicking, Twilight took a deep breath as the gears in her head began to turn, trying to come up with something logical for her next move. My friends somehow sent me a letter that would have passed for a normal one if they didn't write that warning on the bottom. But what did they want me to do, calling me their "last hope"? Most importantly, what in Celestia's name happened here?

Twilight paused, carefully going over those last few thoughts again. There was something in there, something crucial that she'd failed to grasp the meaning of at first sight...

The letter! Immediately, her horn lit up with magic as said letter left the safety of her saddlebags and hovered in front of her face. Her friends had somehow tried to get a secret message through to her, even though it wasn't really that well hidden, so what could stop them from hiding another one in the letter itself?

Her eyes quickly scanned the letter as she read it once more, attempting to discover any additional secret messages if there were any. To her disbelief, there were none. What? My friends only left one message for me that wasn't even difficult to decipher?

My friends...

"My friends!" Twilight exclaimed. "Maybe they left clues in their respective homes!"

Filled with a newfound energy, Twilight shoved the letter back into her saddlebags before galloping off in the direction of Carousel Boutique. She wouldn't admit it out loud, but deep down she dreaded being about to see what Carousel Boutique looked like now that it'd been completely destroyed. Fond memories of Rarity surfaced in her mind, and she chuckled slightly as she imagined how the fashionista would have reacted if she'd seen the sorry state of her precious boutique.

Going at a steady pace, she soon approached the ruins of the Carousel Boutique, wincing as she saw the appearance it'd adopted. At this rate, I won't be able to find anything just because of the rubble! She carefully maneuvered around the debris-littered ground, avoiding any potential dangers.

"Ouch!" Twilight suddenly hissed, her now injured hoof throbbing with pain. She'd been so busy trying to find a possible hidden object that she didn't even notice the jagged piece of rock nearby, thus earning her a sharp stab. Fortunately for the alicorn, there was still some remaining gauze in her saddlebags, so she quickly magicked it out and applied it to her wound. A few minutes passed by before she stowed the bloodied gauze away, having survived the worst of the pain.

As she continued her desperate search, something flashed at the corner of her eye. Is that... the diamond ring that Rarity showed us all those weeks ago? And what's that carved into the diamond? Rarity would never do such a thing!

Twilight carefully inspected the ring, squinting as hard as she could in order to make out whatever was carved into the diamond. To her irritation, it was after a lot more squinting and stinging eyes that she finally managed to decipher the carving.

S. T.

"S. T.? Is this a joke or something?" Twilight grumbled, rubbing at her eyes with a hoof. "I did all of that squinting just to discover some initals?"

Sighing, she began to put away the ring... just as a shocking realization hit her. Wait! What if this is the clue? Maybe they're the initals of whoever's behind this! If Rarity sacrificed her most precious ring just so I could discover this clue, I can't treat it like it's nothing!

Twilight raised her gaze to the sky, cracking a slight smile. Thank you for this clue, Rarity. Even in the face of danger, your Element of Generosity will always come through.

Unknown
Unknown

"Elements of Harmony, why do you still refuse to give up? There is no hope for any of you! No matter what you do, sooner or later, the Element of Magic will join you in your suffering and I will destroy Equestria once and for all!"

"The magic of friendship will never die, you monster!"

"Twilight's smarter than you think! WE BELIEVE IN HER!"

"SILENCE! FRIENDSHIP IS NOTHING! ONCE I AM DONE WITH EQUESTRIA, FRIENDSHIP WILL CEASE TO EXIST FOREVER! YOUR SO-CALLED PRINCESS OF FRIENDSHIP WILL WATCH AS THE FRIENDSHIP SHE CREATED CRUMBLES TO PIECES ALL AROUND HER!"

Chapter 2: No Laughing Matter - Part 1

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