Doctor Whooves of Gallopfrey

3 Months after the last chapter.

"Thanks for tea Flutter!"

Rarity, Apple Jack, Rainbow Dash, Twilight Sparkle, Ditzy Doo and The Doctor were leaving from the wonderful tea they just had at Fluttershy's, (so it was vegan). The Doctor opened the door only to find something he wished he hadn't.

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"EXTERMINATE, EXTERMINATE"

"Oh dear" He exclaimed as staggered back staring at the battle tank in front of him

Ditzy was the first to question the Doctor,

"Doctor what is that thing?"

"It's a Dalek, Ditzy" He stared down its eye stalk before continuing "Big lump of hate that is"

"THE DOCTOR MUST BE EXTERMINATED, PONIES MOVE OUT OF THE WAY"

"It's ok, I have got this"

*BEEEEEW*

The laser hit the Doctor's leg.

"OH CELESTIA" The Doctor shouted as he hit the floor. Blood gushing everywhere.

"DOCTOR" Every being except the Dalek, (Who had already left rejoicing) exclaimed for his life.

Ditzy sat near The Doctor. Tears gushing down her face.

"Doctor, Doctor, Doctor, Doctor, Doctor" Now raining tears she started speaking. "Doctor, I don't want your life to end, Please, don't end. Doctor, Doctor, I lo *sob* love you" she rested her head on the Doctor. Ditzy had just revealed some critical, yet somehow obvious information.

Suddenly a great light filled the room.

Orange light. It was only there for the blink of an eye. Everypony looked up. But when they looked down they did not expect what they saw. What they saw was not the doctor.

His cutie mark changed, his coat changed, his mane changed.

He shot up

"KIDNEYS, GOT NEW KIDNEYS, DON'T LIKE THE COLOUR!" Everypony was confused at the sudden outburst of 'the new doctor' "Hello Everypony"

Twilight spoke, "I'm sorry, but did you say you don't like the colour of your kidneys?"

"And your name is?"

Everypony was taken aback by those words.

The tears that had just disappeared from Ditzy's face came streaming out again.

"I'm the Doctor and if it is not rude to ask, why is she crying onto my Whooves?"

"No Doctor you can't not remember us were your friends"

The Doctor got a searing pain in his temple, he fell to the ground and got left unconscious

5 Minutes Later

The Doctors vision slowly came back to him. He was in a warm house overlooking a meadow.

He got up and felt his velvet coat. He found his sonic sunglasses in his pocket.

He slowly called out through the house to see if anyone was home.

"Doctor are you there?"

The 7 friends walked out of the room, Ditzy was still very distraught.

The Doctor sprinted around eying Everypony off. He came eye to eye with Ditzy.

His eyes lit up

"FRIENDS" he jumped up and hugged every last one. Then he exclaimed, "THAT DARN DALEK, Sorry that had to happen"

The Doctor hoofed it to the living room and jumped into his TARDIS. The rest followed.

Twilight questioned the Doctor

"Doctor what happened?"

To which he replied

"Regeneration, that regenerative energy I used to heal Ditzy was minor regeneration, In the event of a fatal injury regeneration gives me a new body."

"So what changes?"

"Clothes, Quirks, Wit, and face" He did not even look up as he was fiddling with his sunglasses. "A question for you Twilight, Do you know how to use this thing?"

He pointed to his new horn on his head.

2 Days Later

Pinkie had decided to throw one of her usual, Pinkie parties for the new Doctor, there was Food, Games, and alcoh – sorry beautiful drinks. The Doctor mingled with some Ponyville citizens for a while.

He decided it was time to restock the snacks so he ran down to the pantry.

About an hour into the party disaster struck.

BOOOOOOOM

The wall collapsed shards flew everywhere. The Doctor used his new horn the stop the shard in mid-air as it was about to hit Ditzy. The lone pony who smashed the wall stood not more than a meter away from the library. Stepping forward she came into view.

She was a Time Pony

The Doctor knew who she was

It was

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The Master

The Master had a new regeneration. A delightful voice played over the screaming of citizens.

"Hello Doctor, call me Missy"

The Doctor got into attack position. Levitating his sonic onto his head, his short grey hair blew and flailed around from the new breeze.

"Hello Missy"

The Doctor lashed out.

He jumped next to Missy. He was about to throw a punch after having the Master in his hands finally.

But he heard something, something that made his heart skip a beat. Crying. Coming from Missy.

"Doctor, I am truly sorry for everything I did"

She collapsed onto the ground in front of the Doctor. The Doctor let her go.

The crying continued.

The Doctor did something he never thought he would do.

He hugged the Master.

Missy stood up gave The Doctor a peck on the cheek and ran away.