Doctor Whooves of Gallopfrey

by CL4P-TP

Rating: teen
Tags: Tragedy, Adventure, Crossover, Romance, Mystery, Science Fiction
Length: 6772

The Doctor crash landed on a mysterious planet. He is a Time Pony. Ready to save the land from the evil clutches of The Master.

Crash landing on a mysterious planet is never fun.
UNLESS YOU'RE THE DOCTOR THAT IS.
All the Doctors have to give up something,
especially when Equestria is in the evil clutches of Missy.

Published 1970-01-01 00:00:00 UTC
Last updated 2016-03-22 06:46:52 UTC

Friends

A blue box smacked the street at light speed sending it down 1 meter into Equestria on its side. Barely managing to climb out The Doctor collapsed near the hole. Sputtering and coughing he finally managed to observe his surroundings. He realized how light it was. It must have been midday. Slightly getting up he heard a voice.

"Are you okay mister" There stood a beautiful Pegasus. Grey coat, golden hair. "Sorry but what's your name?"

She could not help asking. When someone falls out of the sky in a box. You ask his name.

"I'm the Doctor, what's yours"

"My name is Ditzy Doo, wait Doctor, Doctor who?"

The Doctor replied with a grin and

"If you'd like"

"So your name is Doctor Who"

"Hmmm, make it Doctor"

Ditzy was taken aback by the statement. He was making his name up on the spot. Ditzy stopped when she noticed the cut she had on her hoof. The Doctor noticed as well.

"Ditzy, does that hurt?"

"Yeah"

The Doctor jumped up and walked to her leg. He put his hoof on the cut and suddenly a huge burst of orange light appeared. When it faded the cut was gone.

"What did you do to my hoof?!"

"Regenerative energy" He paused to let it sink in before continuing "does it hurt now?"

Ditzy stared at her hoof. The cut was definitely gone. And it didn't hurt. She looked up again and he had disappeared.

"Doctor, Doctor?"

He was gone but there was something that definitely wasn't. His box in the ground.

The Doctor felt bad about leaving Ditzy. But still, it added to the mysterious personality he had. The pony walked up to a civilisation. PONYVILLE. The sign read PONYVILLE. Under it was teensy writing which read

Population 3500.

The Doctor knew it such a small town, how could it contain that many ponies. The Doctor stepped inside when, a very over excited pink mare appeared, gasped at the Doctor and hopped away. Another mare walked over to him,

"Sorry, that's Pinkie" She giggled then said "You'll be getting a party now, my name is Twilight Sparkle, what's yours?"

"The Doctor" To which she replied

"Doctor? Doctor Who?"

The Doctor was about to answer when four mares joined Twilight. Twilight introduced him to Rainbow Dash, Rarity, Apple Jack and Fluttershy. That's when Ditzy spied the Doctor.

Sprinting over to him she scolded the stallion

"Where the hell did you get to!"

The Doctor just sat there absorbing all the rage

The 5 mares just sat and watched as Ditzy had a go at The Doctor.

"You can't just magically heal somepony then run off!"

She sighed before smiling and handed him a screwdriver.

"Also, you forgot this"

The Doctor managed to get his TARDIS out of the dirt. As the mane 6 questioned Ditzy about this whole magical healing fiasco.

Rarity walked over to the Doctor and stared at his forehead.

"But, he is not a Unicorn darling, he can't have magically healed you"

The Doctor delightfully chimed in, running his hoof through his old white mane he explained how he was an alien.

"I am a Time Pony from the planet Gallopfrey" He paused enjoying the expressions on everyponies faces, "our species regenerates from our injuries, on some occasions we even pass our regenerative energy onto other ponies"

Twilight dropped her mouth at this insane statement.

"But creatures from outer space don't exist … do they?"

The Doctor replied

"Let me show you"

He opened the TARDIS door revealing the inside. He stepped into the box and gestured for them to come in.

They stepped inside with their mouth agape

Twilight said "But

Pinkie said "It's Bigger"

Rarity said "On the"

Rainbow said "Inside"

Applejack said "Than it is"

Flutter Shy said "On The"

Ditzy said "OUTSIDE!"

After a quick tour of the TARDIS, The Doctor flew it to Flutter Shy's House, Where flutter made them all tea.

Over the dinner table they discussed The Doctors species.

Twilight interestingly asked him about their anatomy to which he replied with

"Twilight, we have two hearts, 27 brains and a bad back" Obviously joking about the bad back and the brains, he answered some more questions.

Missy sat in the field with her parasol up staring at fluttershy's house. She kept whispering to herself,

"He is here"

"He is here"

"He is here"

She got up and walked over to the door of the house, she was about to knock when she thought about the Doctor and hers old schooling days. She didn't knock and just stared at the door, it brought a tear to her eye, and she walked away.

The Next Day

The Doctor woke up and found himself staring face to face with Ditzy.

Regenerative Romance

3 Months after the last chapter.

"Thanks for tea Flutter!"

Rarity, Apple Jack, Rainbow Dash, Twilight Sparkle, Ditzy Doo and The Doctor were leaving from the wonderful tea they just had at Fluttershy's, (so it was vegan). The Doctor opened the door only to find something he wished he hadn't.

…

…

…

…

…

…

"EXTERMINATE, EXTERMINATE"

"Oh dear" He exclaimed as staggered back staring at the battle tank in front of him

Ditzy was the first to question the Doctor,

"Doctor what is that thing?"

"It's a Dalek, Ditzy" He stared down its eye stalk before continuing "Big lump of hate that is"

"THE DOCTOR MUST BE EXTERMINATED, PONIES MOVE OUT OF THE WAY"

"It's ok, I have got this"

*BEEEEEW*

The laser hit the Doctor's leg.

"OH CELESTIA" The Doctor shouted as he hit the floor. Blood gushing everywhere.

"DOCTOR" Every being except the Dalek, (Who had already left rejoicing) exclaimed for his life.

Ditzy sat near The Doctor. Tears gushing down her face.

"Doctor, Doctor, Doctor, Doctor, Doctor" Now raining tears she started speaking. "Doctor, I don't want your life to end, Please, don't end. Doctor, Doctor, I lo *sob* love you" she rested her head on the Doctor. Ditzy had just revealed some critical, yet somehow obvious information.

Suddenly a great light filled the room.

Orange light. It was only there for the blink of an eye. Everypony looked up. But when they looked down they did not expect what they saw. What they saw was not the doctor.

His cutie mark changed, his coat changed, his mane changed.

He shot up

"KIDNEYS, GOT NEW KIDNEYS, DON'T LIKE THE COLOUR!" Everypony was confused at the sudden outburst of 'the new doctor' "Hello Everypony"

Twilight spoke, "I'm sorry, but did you say you don't like the colour of your kidneys?"

"And your name is?"

Everypony was taken aback by those words.

The tears that had just disappeared from Ditzy's face came streaming out again.

"I'm the Doctor and if it is not rude to ask, why is she crying onto my Whooves?"

"No Doctor you can't not remember us were your friends"

The Doctor got a searing pain in his temple, he fell to the ground and got left unconscious

5 Minutes Later

The Doctors vision slowly came back to him. He was in a warm house overlooking a meadow.

He got up and felt his velvet coat. He found his sonic sunglasses in his pocket.

He slowly called out through the house to see if anyone was home.

"Doctor are you there?"

The 7 friends walked out of the room, Ditzy was still very distraught.

The Doctor sprinted around eying Everypony off. He came eye to eye with Ditzy.

His eyes lit up

"FRIENDS" he jumped up and hugged every last one. Then he exclaimed, "THAT DARN DALEK, Sorry that had to happen"

The Doctor hoofed it to the living room and jumped into his TARDIS. The rest followed.

Twilight questioned the Doctor

"Doctor what happened?"

To which he replied

"Regeneration, that regenerative energy I used to heal Ditzy was minor regeneration, In the event of a fatal injury regeneration gives me a new body."

"So what changes?"

"Clothes, Quirks, Wit, and face" He did not even look up as he was fiddling with his sunglasses. "A question for you Twilight, Do you know how to use this thing?"

He pointed to his new horn on his head.

2 Days Later

Pinkie had decided to throw one of her usual, Pinkie parties for the new Doctor, there was Food, Games, and alcoh – sorry beautiful drinks. The Doctor mingled with some Ponyville citizens for a while.

He decided it was time to restock the snacks so he ran down to the pantry.

About an hour into the party disaster struck.

BOOOOOOOM

The wall collapsed shards flew everywhere. The Doctor used his new horn the stop the shard in mid-air as it was about to hit Ditzy. The lone pony who smashed the wall stood not more than a meter away from the library. Stepping forward she came into view.

She was a Time Pony

The Doctor knew who she was

It was

…

…

…

…

…

…

…

…

…

…

The Master

The Master had a new regeneration. A delightful voice played over the screaming of citizens.

"Hello Doctor, call me Missy"

The Doctor got into attack position. Levitating his sonic onto his head, his short grey hair blew and flailed around from the new breeze.

"Hello Missy"

The Doctor lashed out.

He jumped next to Missy. He was about to throw a punch after having the Master in his hands finally.

But he heard something, something that made his heart skip a beat. Crying. Coming from Missy.

"Doctor, I am truly sorry for everything I did"

She collapsed onto the ground in front of the Doctor. The Doctor let her go.

The crying continued.

The Doctor did something he never thought he would do.

He hugged the Master.

Missy stood up gave The Doctor a peck on the cheek and ran away.

PINKIE

The Doctor ran up the TARDIS console.

“NO NOT NOW!”

He shouted over alarms blaring throughout the big box.

The Doctor span around and found himself face to face with Pinkie.

“TICKLE WAR”

She shouted as she jumped onto the Doctor.

Ditzy walked in and separated Pinkie from the Doctor.

“Oh come on guys”

The Doctor still giggling levitated Pinkie up from the top of her mane.

In her trade mark high pitched voice

“Oh come on Doctor, if you’re going to be like that I’ll have to put you in a cupcake, like rainbow”

Rainbow dash zoomed in

“What did you say pinkie”

“Well, if I were to say I was a crazy pony jumping between universes what would you say?”

“I’d say you’re crazy”

“Good, because I am!”

She giggled.

Twilight walked up towards The Doctor and Ditzy

Xxx

The Doctor tentatively let Pinkie have a go.

“Oh don’t worry silly, I won’t fly us to some alien planet and put us in a strange life or death situation!”

Twilight whispered to the Doctor

“I can see were this is going”

Pinkie pulled the lever and dematerialized the TARDIS

Flying through space Pinkie pressed the hadron enforcer button

“NO PINKIE”

The Doctor dived in-between Pinkie and the TARDIS console.

…

…

…

…

It was too late.

Xxx

10 minutes later

Xxx

The Doctor shot up from the TARDIS floor. A bright orange light filled the room indicating he regenerated. Only it was minor, it fixed his broken hoof

Rarity and Flutter slowly rose up wailing. Everypony had injuries

Pinkie hopped all around the ponies.

“I crashed a time machine, I crashed a time machine”

The Doctor and Twilight healed the ponies. The Doctor used regenerative energy and Twilight used special healing spells.

“Right, that’s the last time you use the TARDIS Pinkie”

“Ok silly, I knew I wasn’t going to be able to”

The Doctor Whoofed it towards the coordinates.

The Machine read

Equestria, 99999999999999999999999999999999999999999999999999999 *ERROR* 999999****%#@#*4449999999))))#CR

“I think the TARDIS might be broken”

Levitating his sonic onto his head he stared at it

“With current Time Pony technology it will take, 3899 years to fix the bad boy”

Ditzy sat down staring at the floor, that’s when something came out of a corridor.

Suddenly, there was an old grey Pegasus pony staring at The Doctor.

“DON’T BLINK”

He shouted.

“What is that thing darling”

Rarity queried the Doctor

“Weeping Pony, they are fast, faster than you could imagine. Just whatever you do don’t blink”

“Why not Doctor?”

“They are quantum locked, whenever somepony looks at one it turns into stone”

Ditzy finished the Doctors sentence

“So whenever they aren’t being watched they move”

“Correct, when they touch you they send you back in time, they feed off your time energy”

Staring at the stone Pegasus the doctor signalled for Everypony to leave the TARDIS.

They all fumbled outside and fell down a meter or two.

“Where are we Doctor?”

“We are in 9999999999999999999999999999999999999999999999999999999999999999CR Ditzy!” The Doctor sarcastically remarked. “Does it look I know where we are!”

The Doctor span around and saw a grey hoof millimetres away from his face.

“Oh, Hello”

Volcanoes were spewing all-over the place.

“Were In the future Doctor”

Twilight said staring at her watch

“Its midday but its night, Celestia and Luna are not here”

The Doctor spoke still staring at the grey Pegasus

“I have an idea, Blink everyone!”

“WHAT ARE YOU CRAZY DOCTOR”

“Just do it”

Vroop

The Doctor disappeared.

Xxx

The Doctor awoke in the Tardis

He got up and sprinted to the door and found himself fall onto equestrian dirt.

“Ouch”

Regenerative light filled him up and fixed his nose

“All good”

He levitated his sonic onto his head and stared at the box

“1003 CR” He paused before continuing “One year off, not to bad”

Xxx

“Ok so, he is gone”

Twilight stared at the Pegasus, not daring to blink her blood shocked eyes.

The seven friends stared at the Pegasus

Ditzy blinked and disappeared before everponys eyes.

Everyone else blinked at that.

Xxx

7 ponies woke up in familiar environment.

“Welcome to the future, sort of”

The Doctor stood there with a coat hanging off his arms. He looked like chauffeur.

Rarity spake

“What do you mean ‘sort of’ darling?”

“Well were kind of in 1003 CR” He paused before continuing “You guys have been missing for a year”

“WHAT!”

Xxx

Walking up and out of the TARDIS the mane 7 saw it.

COMPLETE

CHAOS

Burnt trees upside down houses.

It was still night time.

Nightmare Moon had also risen again and by the looks of it, she succeeded.

“Without the elements, without you, Equestria has fallen into anarchy.”

They all sprinted into the time machine.

Pulling levers wildly they dematerialized the TARDIS.

Xxx

The TARDIS materialized.

This time in

1001 CR

“Oh we just can’t get it right!”

That’s when they saw it.

They saw Twilight.

The Doctor spoke

“Were stuck in Twilights timeline!”  He paused slightly falling back “WERE DOOMED

I Will Never Forget

“What der yer mean were doomed Docter?”

Applejack was frantic.

The Doctor got up and walked over to Twilight who was very frightened.

“Twilight, please, I beg you, STAY INSIDE THE TARDIS!”

The Doctor raised his voice in the blink of the eye.

Everypony stumbled back at the outburst.

At that moment the doors burst open. It was a frantic pony with a floppy hat and a long scarf.

“HELLO EVERYPONY”

Staring at the strange stallion who had covered his cutie mark, everypony questioned him

Dash was first

“Who are you?!”

“OH DON’T WORRY YOU’LL FIGURE IT OUT” He paused and let in a little metal dog “BY THE WAY WERE HERE TO HELP YOU!!”

To everyponies disbelief the thing spoke

‘What would you like me to do master?’

“RUN A DIAGNOSTICS CHECK OL BOY”

‘Affirmative, running diagnostics check, 14 percent complete’

The stallion span around and came face to face with the doctor. Smiling so much he could be mistaken for the sun he asked

“CAN I BORROW YOUR SUNGLASSES DOCTOR?”

“I-I suppose”

He tentatively handed the sonic the strange pony.

The Dog spoke again

’50 percent complete master’

“GREAT JOB K9”

Twilight thought he sort of reminded him if the Doctor

The strange figure loomed over towards the console.

He incomprehensively whispered to the buttons.

He put on the sunglasses and stared at it.

’95 percent complete master’

‘96’

‘97’

‘98’

‘99’

‘100’

‘Diagnostics complete master, results are’

It paused for a while

‘Gang is stuck in Twilights timeline’

Once again a dramatic pause

‘Suggested reactions are absorb time vortex’

The Doctor butted in

“But I can’t do that!” He stared at the stallions coat “also, are you purposely covering your cutie mark?”

“NO I AM NOT DOCTOR!”

“How do you know my name?”

“LETS JUST SAY, WEEELLLL, YOULL FIND OUT!”

‘Master, problem, problem … species of TIME PONY is approaching the door!”

“WHAT, WHO? K9 ANSWER ME”

‘Pulling up identification card … error … no identification’

This time the tin thing had even more bad news.

‘Master, one more problem, army of 600 CYBERPONIES are approaching with said TIME PONY!’

For the first time the strange stallion did not yell

“Oh celestia, missy”

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX

Missy walked towards the box, cyberponies everywhere.

“Come out boys I know your there, I only want the Doctors!”

Stepping out the door the Doctor stared at the army.

Not far behind him was the pony with the long scarf.

They both dropped their jaws at the sight of all the cyberponies.

Missy complimented the duo for being brave enough to come out.

Then everyone else came out, Applejack, Rarity, Twilight, Rainbow, Flutter, Pinkie and Ditzy

“CAREFUL, IF ONE OF THOSE TOUCHES YOU, WELL, LETS SAY IT WONT BE PRETTY”

“What are they Doctor?”

“Cyberponies Ditzy”

That’s when the strange pony did the bravest thing ever, he pulled out a little screwdriver and turned it on, it span around furiously sending millions of beams of emerald light. Then he ripped off his cloak and revealed the rest of him, he was to everypony else’s awe, A TIME PONY.

Twilight, Pinkie, Rarity, Applejack, Flutter, Rainbow, Doctor and Ditzy gasped, suddenly the Doctor dropped,

“Doctor, are you ok?”

To which he did not reply buy shouted at the strange Time Pony

“QUICK GET OUT OF HERE!”

The strange pony sprinted up the hill and what I can only presume flew away in the TARDIS, emphasise on THE

The Doctor crawled into his TARDIS and explained what was happening.

“I am going to die, don’t worry though I will regenerate and I have pretty good idea of who it will be, any way stay inside the TARDIS, I’m flying us home!”

Barely standing up the Doctor let a furiously bright light out of his chest onto the TARDIS console, suddenly it dematerialized.

Missy cursed at her army

“OH COME ON, FINE NEXT TIME THEN!”

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX

The TARDIS materialized on a street.

The Doctor fell down once again.

“I have absorbed the time vortex, I will, trust me, and I will still love you guys”

The Doctor burst into flames. The TARDIS changed around them as well. They looked down at the Doctor who was still twitching.

At that moment a tin dog burst through the TARDIS doors,

‘Master, in process of regeneration”

“HELLO EVERYPONY”

The Doctor shot up revealing his new body.

“LIKE THE NEW BOD”

“Oh my god” Twilight held her hooves to her face “Really, scarf pony was you?”

“I THOUGHT IT WOULD BE OBVIOUS”

‘Master, your back”

“AH K9, A TIME PONYS BEST FRIEND”

He turned back and stared at everypony,

“WOULD YOU LIKE A JELLY FOAL?”

CAKE

Yawn

The Doctor rose in his jimmy jams.

He yawned once more.

He walked to the storage cubes of the TARDIS and picked out of the selection of his ‘New Clothes’

Slinging the scarf around his neck he checked for his sonic. Which was in his pocket.

Rarity bustled in.

“Oh Doctor, Doctor, Doctor … what have you done to your wardrobe?!”

“Oh uhm, I regenerated”

“Well these drab clothes simply will not do darling, come to the boutique and I will aid in your … dilemma”

A tin dog rolled in and shot a laser inches away from Rarity’s hooves.

‘Masters clothes are perfectly fine, no help necessary’

Rarity levitated the clump of metal into the air and moved it face to face with the Doctor

“Get your … Dog … away from me, I’m allergic”

“Oh get real, he’s metal”

“Oookaaayyy, where are they, they should be here by now!”

“SURPRISE”

A certain pink mare tapped rarity on the back

“WELCOME TO THE DOCTORS BIRTHDAY!”

The Doctor delightfully chimed in

“That, by all means sound great, but I kind of have to go and save somepony”

Pinkies hair deflated and she frowned

Ditzy flew in and nuzzled the Doctor

“Something’s going on in the Daegoba system” (Sly Star Wars Reference)

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX

Everypony laid still on the floor.

Doctor

Ditzy

Twilight

Rainbow

Rarity

Pinkie

Flutter

Applejack

The Doctor shot up and let words fly out of his face at 999MPH

He span around and noticed everypony still lying there

“Hello?” He paused and coughed “Is anypony there?”

“Hello Doctor!”

A voice piped in from behind the stallion

The Doctor span around and found himself face to face with Discord!

“What do you want with me?” The Doctor sprinted to the far end of the TARDIS holding his sonic.

“Oh, I thought you were a time traveller, didn’t you know I’m reformed!”

“Reformed?”

“Yes that’s right, and” Discords face turned solemn as he stared down at the ponies “I think there dead”

It sent a chill through the Doctors spine

“OF COURSE NOT DISCORD, K9 run a check on their heart beats”

‘Of course master’

The Dog rolled over the bumpy floor of the TARDIS

Doing a quick scan on all the ponies he rolled back with both good news and bad news.

‘Master, everypony save for Twilight is in fine condition’

Still having a hearty chinwag to discord he realized what the dog just uttered.

“What’s wrong wi – with Twilight?”

‘Master, she is sick due to the planet we have crashed on and relies on magic’

“What sort of magic?”

‘The magic of friendship’

Sprinting to the doors the Doctor burst out and fell straight onto the dirt. Staring at the magnificent haven that was treating his eyes he realized where he was.

“I don’t believe it, NEW EQUESTRIA”

He rotated his head for a while staring at each building.

He noticed a galactic hospital.

“Maybe they can fix Twilight”

Everypony lifted Twilight towards the hospital. Rarity queried the Doctor

“Darling, why don’t you just use some of that fancy regenerative energy on Twilight?”

“Because her injury is fatal, it would fix her but … kill me”

Then Flutter

“Uh Doctor, if you don’t mind me asking, when uh where are we?”

“New Equestria, your Equestria except, ooh I don’t know 10,000 years into the future!”

At that moment a great celestial light took place in front of them, spilling pink, peppermint, white and some sort of toothpaste colour all over them.

“Halt trespassers!”

Everypony cried in unison

“PRINCESS CELESTIA!”

Princess Celestia did nothing but stare at the limp body they were carrying.

“Oh my” She stumbled back and held her hoof to her forehead “Is that Twilight?”

:hr:

Discord floated out of the TARDIS and eyed off Celestia,

She looked distraught

“Twilight, we have death records and everything, she died thousands of years ago of a unequestrianly sickness”

She began to tear up before the Doctor interrupted

“Sorry to break this heartfelt moment, but if I am right and I usually am with these sorts of things, we need to get Twilight to the hospital ASAP”

“Yes, of course”

Levitating Twilight towards the Hospital celestia stared at the other ponies.

“Oh my, are you Twilights friends?” She checked her head again “You’ve been missing for I don’t know how many years”

Rainbow bombarded Celestia with one question

“But what about the elements?”

“Luna and I have been using them and” She began to tear up again “In a battle with Tirek, they we-were destroyed”

Reaching the milky white hospital doors they walked into Accident and Emergency or A&E for short.

In long stretching corridors they managed to find help.

“Uh, our friend here is sick and we don’t know what to do?”

Levitating the veil of its head it revealed itself as some sort of hybrid cat pony.

“Oh yes, I see the problem, I will see to it straight away”

She levitated Twilight to a ward and said it will be taken care of.

The Doctor asked if they wanted to explore.

Celestia said she has issues to deal with and teleported away.

“Twilight will be fine, there cat kind, the best nurses in all the universe, got a cure for everything apparently”

Outside the hospital they were about to go into the city.

“I’m going with the Doctor!” Ditzy called

“And whys that Ditzy?” Applejack remarked with a smug grin.

Ditzy face flushed a shade of red and she uttered some incomprehensible words.

Rarity chimed in “Oh come on Ditzy we all know you have a ‘thing’ for the Doctor”

“Shut up!”

Ditzy who could now be mistaken for a tomato just uttered two words

“Let’s go”

The Doctor agreed with the remark.

“Ok, Rarity and Flutter go east, Rainbow and Apple go west, Pinkie and Discord go south and Ditzy and I will go north” He made sure he was clear with everyone before saying “meet you in the TARDIS at four”

XXXXXXXXXXXXX

Trampling down the dark alleyway The Doctor and Ditzy came across some street stalls that sold wondrous cake. The Doctor gobbled down truckloads of it. Ditzy who was hesitating thought she saw the salesponys mouth turn into an evil grin and flash normal.

The Doctor, (who should have took extra precaution) called

“Ditzy you must try this wonderful cake” He shovelled down even more of it “It’s absolutely amazing”

“Uh Doctor, I’m not sure you should be eating that”

“Oh nonsense!”

Ditzy stared down at the cake. She grabbed the Doctor and uttered words about the ‘treat’.

“Hey where are we going?”

“The TARDIS”

XXXXXXXXXXXXX

Pinkie and Discord wandered down a road.

“Pinkie, be honest, have you ever liked me”

“Evil, No, Reformed, Yes”

Discord teleported in front of pinkie in an Elvis suit.

“Thank yer, thank yer Pinkie”

XXXXXXXX

Rainbow and Apple ran around the futuristic race track trying to see who ‘The Most Daring Pony’ was.

“If you think you’ll win you have another thing coming” Rainbow sprinted in front of Apple.

“Well if yer gonna float there’s no point” Apple slowed down

XXXXXXXXX

Rarity and Flutter walked down a street that led to a cull de sac.

“Oh I would love to get a new fur, what about you flutter?”

“Oh uh okay”

“I wonder how Twilights getting on?”

XXXXXXXXXXXXX

Twilight lay still in the bed getting fed by an IV fluids machine. She lay unconscious as the cat pony was making observations.

The cat tutted and asked

“Oh Twilight, what have you done to yourself?”

Another pony walked in and levitated a new bag of fluid onto the pedestal

“I don’t think she’s going to make it”

XXXXXXXXXXXXX

Ditzy threw the Doctor into the TARDIS,

“Are you crazy?” She paused and rolled her eyes “Did you not see the demeanour of that salespony?”

“What do you meeeeeeeeeeeeeeennnn” The Doctors eyes rolled back into his head and he dropped. Ditzy dived down onto him

“Oh my, are you ok”

He was still breathing, he was only unconscious

Ditzy pulled out his sonic screwdriver from his tattered pocket and pressed the button. It spun around spewing emerald light everywhere.

“You never taught me how to use this!”

She blindly pointed it at the Doctor. Staring at the light show that was filling the TARDIS.

The Doctor blinked his eyes

“OH MY NEVER EAT THAT CAKE WHO WAS THAT PONY” He shot up at light speed.

He groggily loomed over towards the TARDIS console. He blindly pressed buttons, turning on the time manipulator.

“Doctor what about the others?”

“I’m going to fly sexy closer to the hospital”

“I’m sorry did you just call the TARDIS sexy”

“No, maybe not, yes”

He started stroking the console.

“Do you two want to be alone?” Ditzy was shocked at the behaviour of the Doctor “Must be the cake” she thought

Discord spied on the Doctor and giggled from his latest prank. Pinkie wandered over to him, he quickly shooed away the cloud he was using to spy on them.

Landing the TARDIS the Doctor snapped out of his trance.

He fell to the ground and muttered

“Whe-where am I”

“Doctor, are you ok?”

“Ditzy?”

“Yeah”

“Why is my only memory cake?”

PLOT TWIST!!

Twilight laid unconsciously on the bed getting fed by a fluids machine.

The Doctor sprinted around the TARDIS, Ditzy just staring like he was crazy.

“Look Doctor, perhaps I should go check on Twilight”

“No, let’s go together”

Sprinting up the little hill Ditzy summoned the courage to say something.

“Hey Doctor, I’ve been thinking about, you know, us”

The Doctor had already raced ahead. Ditzy just muttered.

Reaching the milky white hospital Ditzy just stared at the statues on each side of the doors.

They had an uncanny resemblance to

Weeping

Ponies

Ditzy shook off the memory and thought herself silly for thinking about that time.

Reaching the metallic lifts, The Doctor was so ahead the lift had already closed.

“DOCTOR, DON’T WORRY THERES ANOTHER LIFT!”

Ditzy had to shout for The Doctor to hear.

“LOOK OUT FOR THE DISINFECTANT!”

“WHAT”

“LOOK OUT FOR THE DISINFECTENT!”

“WHAT”

“LOOK OUT FO – oh you’ll find out”

Ditzy stepped inside the lift shrugging off the thought.

“Twilight”

The lift spoke back

‘Ward 45, Twilight Sparkle, Disinfectant imminent’

Water shot through the lift right onto Ditzy’s head.

The sudden impact of water made her jump, she’s been in water before but this shone a new light on it.

She screamed.

Then the cold water turned into dry muggy air which blasted her back and forth.

Lastly, cold stiff robotic arms dried her hair and styled it to what it used to be.

The lift doors opened, a traumatized Ditzy stand there staring blankly with her mouth agape.

The Doctor walked up to Ditzy with a smug grin.

“WHY DIDN’T YOU TELL ME?!”

“About the freezing cold water, dry air, and robots, who me no?”

Ditzy growled at the Doctor.

That’s when the *Beep Beep* of the cardiovascular machine dragged her attention.

Staring at the limp lifeless body. She started to pace over there.

In the bed was Twilight.

Tears started to well in Ditzy’s golden eyes.

That’s when the lift doors opened revealing five ponies and a Discord all with shocked expressions and there mouth agape.

“Found the showers” *Thump, Rarity had just fallen to the ground.

Pinkie hopped towards Twilight and put the mangled flowers in the vase on her bedside table.

Flutter floated towards the Doctor.

“Uh Doctor, um what’s going to uh happen, to … Twilight?”

“Uh not sure flutter!”

At that moment a cat kind walked in.

“Oh are you patient 334’s friends?”

“Yes”

“Is she going to be ok nurse catheart?”

“She’s going to die, but we found some traces of weird energy, emanating from her body"

Rarity

Rainbow

Flutter

Applejack

Pinkie

And Ditzy shuddered

Tears started to well in their eyes.

Celestia teleported behind the Doctor

“Doctor, take Twilight home, let her die a death at home”

Those were the last words Celestia spoke to the Doctor, before he ran off carrying Twilight.

And when I mean run off, he took off, like a flash.

Like Filly Second

Like seriously vroom POW!!!!

Ahem, back to the story.

Taking off down the sweet apple grass tears flooded out of the Doctors eyes.

The Doctor placed Twilight down on the sofa. She opened her eyes slowly, she weakly spoke barely coughing out the words.

“Doctor, run you clever stallion, and remember me”

Twilight closed her eyes again as Ditzy and the others walked into the TARDIS.

Vroom, Vroom, Vroom, Vroom,

The TARDIS took off,

XXXXXXXXXXXXXXXXXXXXXXXXXXXXX

Landing in the middle of Twilights library was great,

“PERFECT AIM IF I DO SAY SO MYSELF” were the words he choked out between sobs

The rest did not say a word, it was as if they were possessed by the very death of Twilight before their eyes.

Ditzy was the first to break there solemn silence

“Doctor, now might not be the best time, but”

She could not speak anymore words as something odd happened to Twilight.

A cold blast of orange light radiated from her mouth

The Doctor smiled,

“No, she can’t be!”

Giggling he ran around like a filly,

HA HA HA HA, hopping around like mad he just spoke

“SHE’S GOING TO LIVE!!!”

Rarity (one again) queried the Doctor,

“Whats happening”?

“I DON’T BELIEVE IT, SHE’S A TIME PONY!!!”

Everypony stuttered back at this bias remark.

Ditzy just stuttered

“Bu –But her Cu – Cutie Mar –Mark?”

“SHE’S IN DISGUISE”

Then it happened, Twilight flashed, she turned into not only another time pony,

She turned into another mare.

For starters her cutie mark changed from her sparkles to a river with a music note in it. (Most fans of who will know where this is going [River with a music note] wink)

Her mane changed to a frilly blonde colour.

And her personality changed

She winked and mouthed

“Miss me, gang?”

The End, Yet Somehow ... Only Just The Beginning

“Come on girls, let’s get cutie marks in TIME TRAVALING”

Those were the last words the adorable trio spoke to the Doctor before running off looking for adventure.

Sweetiebelle nearly fainted at the sight of the place.

Apple bloom just looked at the controls, thirsty to press buttons.

Scootaloo just dropped to the ground.

“OH MY GOD”

Twilight, (should I still call her that) walked in.

“WHAT ARE YOU DOING IN HERE GIRLS?”

“Uh the Doctor, let … us … in”

Twilight just jotted her head towards the Doctor,

“Don’t get into trouble, I have to go help Ditzy set something up, and explain to my friends who I really am”

The Doctor couldn’t help but feel guilty about her recent regeneration, you see, Twilight was an undercover time pony from the CIA on Gallopfrey. (Celestial intervention Agency) Whenever she regenerates, her hourglass cutie mark doesn’t drain a bit, in fact, despite being a time pony, she doesn’t even have an hourglass cutie mark. The General of the CIA has a cloaking device that changes the pony’s cutie mark. The Doctor was offered a job there once, he denied it and ran away from Gallopfrey, (naturally).

Daring Do sat down in her jungle hut,

“Oh my, it’s been a rough day, PERFECT FOR THE BOOK!”

Frisbeeing her hat onto her rack she jumped onto the type writer, here she is no longer Daring Do, but A.K Yearling.

That’s when she heard it. The Sound of the Universe.

Vroo, Vroo, Vroo.

From the depths of the house she heard

“Ok stay back little fillies, we still don’t know where we are”

The Doorknob got stuck

“Oh it’s locked, GOT THE PERFECT THING FOR IT”

*Wzzzzzzzzzrrrrrrr, Wzzzzzzzzzzzrrrrrrrrr*

*Click*

“There we go”

Daring do ran to her hat rack and took her hat, she also very swiftly put her black cloak on, she hovered up closer towards the ceiling eyeing off the strange stallion moving through the house.

“Looks clear crusaders!”

“Okay Doctor”

The adorable trio trotted into the hut,

“WHOAH, this looks like rainbows place”

Daring Do posters were strung around like entrails in Pinkies room in ‘Cupcakes’

Scootaloo wandered around the room staring at the posters.

As she tripped over the typewriter she notices what was there.

“OMIGOD, OMIGOD, THIS IS AK YEARLINGS HOUSE!!”

Daring Do wings stopped for a second falling down she made a loud crunch.

“Oh No”

She uttered as she touched her wing.

“OBOY, ITS DARING DO!”

Daring Do stared at the four ponies.

Scootaloo fainted.

The Doctor, still staring at Daring Do, pointed his screwdriver at Scootaloo.

She popped up again.

“I am such a fan miss Do”

Daring Do just eyed him off.

Daring do sat down once again in her little hut.

“I’m sorry, what did you four want?”

“ADVENTURE”

The Doctor shouted.

“Heh, you sound like my kinda guy”

“Heh well”

The Doctor blushed.

She continued.

“There’s some seismic activity in a new temple discovered weeks ago, wanna check it out?”

“Sounds good”

Approaching the temple the Doctor scanned it with his sonic.

“Oh that’s interesting!”

Entering the temple, it shook violently.

A block fell onto Sweetiebelle

That’s was that.

It looked nasty.

Sweetiebelle must have been squashed to a pulp.

“SWEETIE!”

The Doctor, Scootaloo and Applebloom all cried.

The rock lifted

Sweetiebelle was barely levitating it.

The Doctor dove underneath and snatched her.

At that moment the silence of the temple was interrupted by

*Vroooo *vrooo

“Oh why am I so interested in myself?”

The TARDIS materialized around the Doctor, it engulfed him.

He fell unconscious.

Awakening on familiar ground he blinked furiously.

All he could hear was

“It’s time Doctor”

“Time to leave”

Daring Do and the girls crept into the box that ate the doctor.

Staring they say the Doctor.

Laying on the ground.

Eyes as white as the void.

Twitching.

A mare was whispering in his ear

“Doctor it’s time”

“Time to go”

“HEY WHAT ARE YOU DOING?”

Daring do shouted at the figure.

The Doctor snapped up.

“Time to go ay? 5 more minutes?”

He sat and stared at the four ponies.

“Crusaders, I have to go, I will not be coming back again”

“But why”

“You wouldn’t understand”

The mystery mare just grabbed the Doctor

“IT IS TIME, TIME PONY!”

“Yes, hang on” He shouted “Crusaders, tell Ditzy”

Tears welled in his eyes

“Tell her, I’m sorry and that I”

The mystery mare tightened her grip

“NOW TIME PONY!”

She pulled him and threw him onto the ground.

“And that I”

She kicked him

“Tell her I”

Another kick

“Lo”

Another

“Ve”

Another hoof to the face

“Her”

“DOCTOR”

An invisible force engulfed the Doctor.

The mystery mare lifted her hood and revealed herself to be Missy

Daring flew straight to her almost strangling her.

“You bring him back”

“NOW”

Missy just smiled.

“Now with him out of the way I can slaughter you all and take over equestria!”

To Be Continued

Prologue, The First Doctor

Doctor Hooves, the First Doctor

Gallopfrey, Horse Head Nebula, 3004 TLR

He sprinted down the hallway, alarms blaring from everywhere. He stumbled over his hooves being the clumsy pony he was. He was the Doctor. Stealing a TARDIS. He took a sharp turn and exhaled sharply as he hit a wall.

"Ouch" He fell over and smacked the floor

The intercom on the wall blared over the alarms, "You don't have to do this, Doctor"

"Shut up!"

At that moment a pony approached the Doctor. The feminine pony spoke with a voice like silk.

"Quick I will show you to a TARDIS"

The Doctor could tell she wasn't a Time Pony, but something about her felt familiar.

"What's your name?" The Doctor asked with a queer tone, to which she replied, "Clara, My name is Clara – Take this TARDIS, the navigation is all messed up but … you will have heaps more fun"

Equestria, Milky Way Galaxy, 1002 CR

Twilight shot up from her study. She yawned slightly as she levitated her glasses onto her head. What was that dream she was having, something about a Time Machine and Aliens, she shrugged as she started to pack up the study. She stumbled over her hooves as she remembered what the book was stating 'The witch of Equestria will one day return' the witch was supposed to be a mare with a hourglass cutie mark, it says she wields an umbrella, has a blue coat and went by the alias of 'Missy'

She shrugged off the thought and got up.

Missy dropped her parasol onto the harsh equestrian earth, "Ahh Ponyville, think I might go and you know, kiss a few ponies, upload a few cyber ponies maybe even kill some" she giggled at the thought of all the screaming as she burned down houses. She smiled as she stared at her hourglass cutie mark, the trademark of all time ponies. She pushed the thought away of her home Gallopfrey.