Equestria Girls Prime

"Canterlot city." A Shadowy Titan-like figure with glowing red eyes spoke as it look at a screen."This is the last place we have yet to search."

"Are you sure the Autobots are here commander?" A second titan spoke, which had a singular glowing eye."For all we know, they could no longer be on earth."

"Are you questioning my authority?" The commander spoke as the second Titan stepped back."Send some scouts into the city, find them and bring them to me." The commander demanded as the second titans left as another entered."What is it?" The Commander asked as the titan's face, which was a screen, showed a signal." A signal..from deep space?" The commander asked as the faceless Titan nodded."Ignore it, it's probably was a glitch."

---Canterlot, Flint Locke---

"Welcome to Hay Burger, where every burger is Hey-riffic." I said with a bored tone as I spoke into a mike."What will you be ordering?"

"I'll have three burger combos, with a side order of fries." The person said back as I typed in their order."Also where can I get an amazing job likes yours?" The person asked followed by laughter as I glared at the speaker.

"So that will be three combos of we're not as funny as we think we are.." I shot back."With a side order of bite me."

"What was that?" The person asked with an angry tone.

"Pull up to the window." I said annoyed as the person drove up as I placed the food on the window ledge as they grabbed it and drove."HEY, you're supposed to pay for that."I groaned as the people laughed as they sped off."I hate Monday's."

"Flint, go home." My manager said as I took my apron off."See you Thursday."

"Yeah, sure." I said as I left the restaurant and pulled my phone out to check the time."I have an hour left." I said as I looked at my arm.

"HEY FLINT!!!" A cheery voice shouted as a pink bundle of energy approached me."How are you?"

"I'm fine." I said nervously as the girl stared me."Can I help you Pinkie?"

"I'm setting up a summer kick off party this Friday and wanted to if you would come?" Pinkie asked handed me an invitation."I know you don't do well at parties, but will you please come to this one?"

"Sure." I said as Pinkie squealed and picked me as I felt my bones crack from her death hug."You're.....killing....me."

"Oops sorry." Pinkie said as she let go of me as I gasped for air."How's your arm doing?" She asked as I glared at her."Nevermind." She said running off.

"I wish people would stop asking." I said as I looked at my arm and the wires running through it.

---4 Years earlier---

~N.E.S.T facility~

"Welcome Agents." A scientist said as two agents walked in, one named Fowler and the other Spitfire."I assume your here to see Subject 17."

"Indeed." Agent fowler said as Spitfire crossed her arms."I assume you remember Agent Spitfire?"

"I do, you're the one who brought us 17." The scientist said as Spitfire glared."L-let's get going, shall we?"

"Please keep Your cool Spitfire." Fowler said as Spitfire sighed."I know it was hard for you."

"I haven't seen him in two years." Spitfire said sadly."He's probably some mindless robot now."

"He's not, I've spoken to him when I'm here, he's still the same kid." Fowler said as they followed the scientist."Minus him not having an arm and a leg."

"We are here." The scientist said as they entered a room."Subject 17 will be with us soon."

"He has a name." Spitfire said under her breath as the scientist left."I wish they'd use his name atleast."

"Can't argue there." Fowler said as they sat down."The time he's been here, the only thing that he hung onto was hope."

"That's Flint for ya." Spitfire said with a small smile."Crimson wanted to come, but he had to stay behind to keep an eye on Green Song. Kids have been bullying her at school again."

"She having trouble, due to being a changeling?" Fowler asked Spitfire nodded."I'm surprised you managed to keep your job a seceret from your family for so long."

"It was hard, I'll admit." Spitfire said sadly."But I just don't want...you-know-who coming after them."

"Who...Megatron?" Fowler asked surprised."He's been in deep space for the past twenty years or so, if he ever came back, we'd be ready."

"Sorry about the wait." The scientist said as he entered the room."17 was training, so we had to wait until he was finished."

"What kind of training?" Spitfire asked as Fowler crossed his arms."We never authorized any training Proto."

"Just some simple exercises to control his new cybernetic limbs." Proto said nervously as Spitfire glared at him."Acrobatics, aquatics....combat."

"COMBAT?!?!" Spitfire shouted in rage as the room got quite."He's twelve years old, he's too young to join the army."

"Not that kind of combat." Proto said as Fowler placed a hand on Spitfire's shoulder to calm her down."He's been training for in case the Decpticons ever returned."

"He's not supposed to know about them." Fowler said with a hint of anger."Have you mentioned this to him?"

"No, he never even asked either." Proto said as Spitfire calmed down."We can stop the combat training if you wish."

"Please do." Spitfire said as Proto nodded."Where is he, I want to see him."

"17 is waiting for you in the lobby, but however he cannot leave just yet." Proto said as they left the room."We need to finish one last thing until he can leave."

"And that is?" Fowler asked.

"To see if the disease is finally gone." Proto said with a stern tone."The disease he has was quite hard to find a cure for, when we did surgery the bones in his arm and leg were practally turning to dust."

"So, he has bionic limbs then?" Spitfire asked as the doctor nodded.

"Not just any bionic limbs, usually you'd have to see a doctor to get new one." Proto began as they entered the lobby."These are cybernetic limbs, they will grow as 17 grows older, they feel and look just like a normal limb would."

"Hi mom." A young voice called as Spitfire looked around and saw a young boy wave his hand, he had black hair and red eyes.

"And there he is." Proto said as the boy smiled."You remember your mother?"

"Of course." Flint said as he hugged Spitfire."I missed you."

"I missed you too kiddo." Spitfire said as Fowler sniffled."How soon can you get those test done?"

"It will take a couple minutes." Proto said as he pulled out a device and waved it over Flint as it beeped."Everything appears to be good, the disease cannot be detected, which means it is gone."

"So he can go home?" Spitfire asked as Proto nodded."You ready?"

"Please get me out of here." Flint said as the group laughed."Bye Mister Proto."

"Bye 17." Proto said as he smiled.

"My name's Flint." Flint called back.

---Present---

"I wonder how Protos doing?" I asked myself as I rode down the street as I noticed a yellow and black car in front my house."Oh Dad."

"Hey Flint." Crimson said as I rode up to the house."Look what I found at the junk yard."

"Mom is going to kill you." I said as I set my bike in the grass."Cool car anyway."

"Thanks, i saw it and the guy said he never saw it until then." Crimson said as he leaned on the car."He just gave it to me."

"Not surprised, junkyard Joe always liked you and mom." I said shrugging."Anyway, Mom home?"

"Yeah, she's inside, Your sister left earlier to go to Rainbows." Crimson said as he popped the hood open as I went inside."Ladies and Gentlemen the doctor is in. Now little laddie tell meh what's botherin' ya." Crimson said with a Scottish accent.

"Hey mom." I said as I entered the house." You see what dad brought home?"I asked as I heard mom talking on the phone.

"So you need to come back in?" Spitfire said as she talked on the phone as I walked past the kitchen."No, I haven't heard or seen anything from any of them.....I understand but I can't just leave, Crimson will want to know and I can't just lie and say it's business."

What's she talking about? I thought to myself as I walked to my room and got changed.

"You're starting to sound desperate William." Spitfire said smirking." I'm sure you can handle it without me." She said as her smirk quickly vanished."What do you mean 'they're back'?" Spitfire said worried as I sat in the living room."Are you positive?....They saw them with their own eyes?...I'll see you soon then." She said as she hung up as she spotted me."How much did you hear?"

"Not enough to know what's going on." I said as Spitfire sighed."Everything alright?"

"You remember Fowler?" Spitfire asked as I nodded."That was him, he needs some help with something, so I'll be gone for a few days."

"Okay." I said shrugging." If it's business, I'm staying out of it." I said as Spitfire smiled."Also, did you see what Dad brought home?"

"The car, I know." Spitfire said as a thud came from outside followed by some very 'colorful' language."I need to start packing, If your father asks, tell him and old friend needed some help."

"Well it's not lying." I said as I turned the tv on.

---???---

"The Autobot scout has been located." A car said as it watched Crimson fix his new car."But he is with a human, What are my orders commander Starscream?"

"Report back." Starscream said as the car drove off."Job well done."