The Doctor, Twilight, and Lyra go on an adventure outside the borders of Equestria to close the second portal that will allow the Doctor to arrive home in his own universe. But outside the borders is a dangerous place. Many unknown creatures lurk in the shadows, and they can only hope that all goes well. Meanwhile, the ponies of Ponyville meet the Dalek, and war follows. Continued from Doctor Whooves Part 1: The Oncoming Storm. you can read this without reading the first, but it is recommended that you read the first.