Ponyville hospital 10:30am

"Uhhh." Thorax moaned as he slowly opened his eyes. And a he saw a long white bandage wrapped around his chest.

He then placed his left hoof on his forehead and looked around his surroundings and saw that he was in a hospital. He also felt something heavy on his chest, he looked down and saw his wife Twilight sleeping comfortably with her head on his chest and sitting on a chair with her large belly.

Thorax smiled when he saw his wife sleeping comfortably on his chest, he then gently tapped on her head.

When Twilight felt the tap, she moaned ad slowly opened her eyes.

"Uhhh... who is it?" Twilight asked as she opened her eyes.

"Twily, it's me."

When Twilight regained her visions, she saw Thorax awake and looking at her with a smile.

"Oh, Thorax." Twilight said with a smile, she then climbed on the bed and hugged him and Thorax hugged back.

After hugging each other for ten seconds, they released and shared a kiss for another ten seconds, and released again.

"How long was I out?" Thorax asked.

"Five days." Twilight replied which shocked him.

"Wow, I was out like a light." Thorax chuckled.

Twilight giggled from that response. Then she remembered something.

"Oh right, since your awake we need to go to the hospital's exit." She told him.

"Why?"

"You'll see, now come on." She said as she got off his bed.

Thorax then slowly sat up straight and got off the bed with Twilight's help, then she slowly stood up.

"Are you strong enough to walk?" Twilight asked him, and Thorax replied with a nod.

"Then let's go."

Twilight then lead Thorax to the exit of the hospital. They walked downstairs and made a right turn and made it to the exit doors.

Twilight walked forward and opened the door for Thorax.

Thorax then walked forward as well and exited the hospital with Twilight, and unexpectedly he head some party ribbons being shot out and some party horn noises. And when Thorax looked in front of him, he saw the ponies, the mane six, Spike and the princesses cheering and clapping.

"Thorax! Thorax! Thorax! Thorax!" Cheered the ponies.

"Thank you for saving us Thorax!" Yelled a mare.

"You are our saviour!" Yelled a stallion.

Thorax was disorientate when he heard all of those comments, he is not one of them and he is a ruthless Agent from the hive.

When Twilight saw her husband's perplexed expression, she soothed him down by hugging him, and Thorax smiled from his wife's hug.

"How is it like to be loved by everypony Thorax?" She asked while nuzzling him.

"It's great." He chuckled "But what's the occasion for?" He asked her.

"Isn't it obvious?" Twilight asked "This is an occasion prepared by all of the ponies including me to thank you for saving all of us from the changeling hive." She replied.

"Oh."

Then the princesses walked up the stairs and Twilight took a bow.

"Thorax is it?" Celestia asked.

"That's correct your majesty."

Then Celestia have him a warm smile.

"Thorax, thank you very much for saving me and my sister's subjects."

"Your welcome your majesty."

"Since you have shown all of us courage and sacrifice, how would you like to be the protector of Equestria?"

"That would an honor your majesty." Thorax replied with a smile.

Then Pinkie jumped happily around everypony.

"Oh and also, we have a special guest." Celestia told him.

"Who is it?"

"You'll see." Celestia said, then she turned around "Pharynx, you can come up here now."

And on cue, a dark green changeling who was almost as tall as Thorax walked forward and climbed up the stairs and looked at Thorax with a smile.

Thorax was surprised when he saw the changeling he met in the martial arts academy transformed and here.

"Good to see you again Thorax." Pharynx said with a warm smile.

"Pharynx? How did you transform? And how did you get accepted here?"

"To answer the first one, I did a good deed which made me transform. And for the second question, some changeling riot police officers and an angry commander Spectre, invaded here again and tried to confiscate the G-Virus again, but before they could do that, I swooped in and kicked all of their butts with my wing chun skills which made all of them retreat, and that's how I gained all of the ponies trusts."

Thorax was truly amazed at his words.

"Now that is amazing."

"You bet it is." He replied with a nod "And also, Spectre has become a Ninja master Yesterday, and now he has an army of changeling ninjas with him." He told him with a scared expression.

When Thorax heard that, he gently placed his right hoof on his shoulder.

"Don't worry buddy, if all of us work together we can defeat them and send them to custody." He assured him and Pharynx nodded.

After that, Pinkie screamed and jumped around the ponies.

"Guys! Let's put all of the talking away and start partying!" She yelled.

All of the ponies nodded and began to party.

After the heroic rescue at the changeling hive, Thorax and Pharynx lived in Twilight's castle as a family. And they worked together to build advanced technologies to protect their land. They built large mechanical titanium wall at the entrance of Ponyville. Some high tech prison cells in Canterlot's dungeon, a pharmaceutical laboratory in Ponyville with thousands of medicines and loads of technologies and doctors were hired there.

And after a few months, Twilight gave birth to a young Prince alicorn colt named Alistair and Thorax and Twilight were very happy to be parents, Pharynx was very to be an uncle, and Spike was extremely happy to become a big brother.

Alistair became interested in chemistry when he was three years old in kindergarten which made Thorax build a laboratory in the castle in his four year old birthday.

But, the nightmare is not over yet. Together Thorax, the mane six, Spike Pharynx, the princesses, the Royal guards and the citizens of Ponyville battle the changeling ninja team to protect their land.

The End

Author's Note

Well here we have it folks, my new story has come to a conclusion. I hope you all enjoyed it. And sorry if this chapter was a bit rushed or unclear I gave it my best shot. Either way, thank you all for reading my story. And I think I'll make a crossover story with this one.

And also, I do not own the character Alsitair in my story, he belongs to Percy-McMurphy on deviantart.
Here's the link to it.
https://www.deviantart.com/percy-mcmurphy/art/TwiRax-Nextgen-Alistair-784650921