Taking place 3 months after the destruction of the doomseye, and the federation's victory against the space pirates, all has been quiet in the galaxy, and now the federation have discovered a new uncharted world, rumored to have a space pirate phazon mining operation on it. When they send their resident bounty hunter, Samus Aran to investigate the world, they expect her to return with good news. The thing is, she hasn't returned back at all... Knowing the danger the pirates still pose, the Federation has decided to send the best men they have. Prime squadron, the very mechanized combat team responsible for beating back the space pirates and destroying the doomseye, perfect for an operation like this. Of course, they have big hulking combat mech's, but it should be fine. Luckily, their mech's have got a few special upgrades and new equipment to test.

However, when the team lands in Equestria, they soon see why Samus has not returned... And the team is ready to save this world from the space pirates and other threats, or die trying. Preferably not die, but still. This is the story, of Blue Atlas, the cheery, motivational British commander, Red Ivan, the brutish and tough, but benevolent Russian giant, Green Roger, the tech headed, by the book, American patriot, and Yellow Jacket, the wild style, destruction loving Australian elite. This, is how they helped save not only Equestria, but the entire galaxy!

"Prime Squadron, you have your mission. DEPLOY!"

Character tags shall be added as I go.
This story also takes place in an alternate universe, where the events of Metroid Prime Federation Force take place between Metroid Prime 2 and 3, before the destruction of the corrupting world, Phaaze.

This story is heavily inspired by Metroid: Ghosts Of Harmony, written by Flammenwerfer.
Link to Story: https://www.fimfiction.net/story/486171/metroid-ghosts-of-harmony