Everyone knows 17 year old Twilight Sparkle is truly gifted for being so intelligent for her age. So gifted, her parents send her to Celestia's Academy for Talented Teenagers, where she hopes to continue her regular studies. Only if weren't for Principal Celestia bothering her about making friends with five 'harmonic' girls about her age, the place would be perfect. But could these five 'harmonic' girls help her achieve her true destiny?

It had officially been a year since Sunset Shimmer had gone into the portal. Flash Sentry, Heartbroken, realizes he has to meet up with Sunset's parents, to officially declare that Sunset is dead. But while on his way there, he soon bumps into a young unicorn filly being bullied. Little does he know, this filly might be able to cheer him up.

When Twilight and her and her friends are accidentally sucked into a green blur Twilight found at her doorstep, they end up in an unknown village near the beginning of a dark forest. They soon learn that the village ponies are planning to execute Twilight, thinking that she is performing witchcraft for being an alicorn. They are soon saved by three peculiar mares who claim to be Sunny Rays, Medicina and Lunar Skies. But soon find out, that the green blur, is out to kill every single pony in every single universe to ever exist.