The story follows Twilight's experiences with Tiberium and everything relating to it; her bouncing trust with Luna of GDI and Kane Hooves of Nod, her own conflict with oneself and crimes she did.

After the defeat of Tirek, Princess Twilight Sparkle must now face new challenges, including betrayal of her friends and worse.

How Twilight Sparkles, Princess of Friendship, uses her new powers to bring friendship? - Showing missteps of Celestias rule. Using her new Magic against all Princesses... Or is it insanity dictating Twilights moves?