Author's Note

I went through so many trial and errors with this story, that I had created maybe 10 deleted stories, so this is how it will stay. To those who don't like it, screw you, I tried.

This stories Naruto, will possess the memories of Sasuke Uchiha, Kakashi Hatake, Obito Uchiha, and Itachi Uchiha. He will have possession of every single Sharingan eye, including the ones Danzo possessed. He was deemed to be the best protection of the Sharingan eyes, so he sealed them within him. Then when Itachi was revived and used Kotoamatsukami, he gifted Naruto Shisui's eye as could sense Naruto already possessed the other.

Chapter 1

Naruto's fight with Kaguya was hard and bloody, he lost limbs and lost friends. He fought till the war was on, and in doing so he lost all his friend and family, Sasuke was dead by All Killing Ash Bone, giving Naruto his eyes as a birthday present. Obito was next to die, using the same Jutsu is father used to seal Kurama inside him, to unseal the Bijuu from Kaguya, It worked but Obito gifted Naruto both his eyes, wanting to use his Rinnegan for the good of of others. Kakashi and Sakura were the last, Kakashi saw how Obito gave Naruto his eyes, and did the same. Sakura did something that would forever haunt Naruto. She kissed him and asked for forgiveness at how blind she was.

When they both died Naruto's mind became haunted by how powerless he was but he did not allow it to consume him. He saw the Memories of Obito and Nagato through their own eyes, He saw Kakashi kill Rin and how it crushed them. He also noticed how Obito saw it also, how he took it as betrayal. He then saw Itachi kill his family, and look at Sasuke who he also saw through they eyes of. He was in a loop of witnessing all that happened before him, He also saw through Madara's eyes, the Rinnegan, He saw everything every Uchiha's eyes he placed into him saw. All their pain and emotions, he did not allow it to consume or guide him, he would use all their pain to fix whatever world he joined.

He saw the universe he was in collapse suddenly as he was blasted into what could only be called a True void, he wrapped his body in Kurama's flickering chakra. He was soon knocked out when He heard the Bijuu scream in terror.

Opening his eyes in the middle of a desolate wilderness was a crimson Nine-tailed fox, that had red hair, and all across his body, fur and hair he had blonde highlights. His eyes were a glorious violet slitted eyes. He wore a royal outfit that easily gave him the title. One a belt was the handle of a Kusanagi, along with a Pip-Buck attached to his forearm. This fox was Naruto.

Looking to his body he groaned, "Great I look like some weird combination of Mom, Kurama, and Dad." He closed his eyes for a second before opening them again to reveal the eyes turned red with three black tomoe, "So I still have his eyes." Feeling the nature energy in the world he had no choice but to cringe from pain, the world was corrupted. Nature energy was filled with so much hate, why though? He looked around and understood almost instantly, the world is destroyed, he could see a city in the far distance that was ruined to the point of it being unlivable. It reminded him of Amegakure, but it was damaged beyond repair, he also could see with his Sharingan the level of destruction. His red eyes narrowed on the city.

His single fox ear perked up when he heard the sound of hoove step, then he heard a unearthly snarl, His eyes drifted from the destroyed city in the distance and focused on his sense of hearing.

He closed his eyes and focused solely on hearing, wanting to gain a better understanding of his body, his sense of hearing will be perfect. All Around him came into focus, one thousand two hundred feet to his left, in the middle of a small dead forest was a cabin, inside that cabin was a few walking creatures that had no heart beat, around the cabin was similar creatures. Each one was quadruped no not a human, likely an animal of some kind? But even he not dumb enough to believe animals have no pulse! So what is it?

He felt the slow pulse of an insect behind him, or what he assumed as an insect, it was larger than any he had know of. He turned his head to the direction to the left and saw the cabin that looked old and run down. His ears perked when he heard the sound of an agitated insect, likely spotting him, he put his paw/hand on the blade of his Kusanagi. Running a small amount if wind chakra through the dull blade, causing it to sharpen to a dangerous degree. He felt the insect close in on him, it reached the point of no return in a second, the point where Naruto's blade would easily cut its targets to pieces.

Naruto spun on his heel and sprung towards the startled insect like a viper prepared to strike. The blade sung as it slashed the ugly insect in half, it was all bloated and it looked like a fly. His Pip-buck activated and name the creature as Bloatsprite, he looked at the creature with absolute disgust. "Gross, I don't understand how this thing could even exist!"

He looked towards the cabin and frowned, "What ever they are need to be put out of their misery, with all the knowledge Sakura-chan gave me, I know those creatures are not natural." He swung his Kusanagi spraying the blood across the dirt. As he stopped channeling his chakra into his sword it became dull again, though it was slightly sharper. His Sharingan eyes fizzles out, returning to the Violet slitted eyes. He looked at his tails and tilted his head, "I wonder if I can use these in combat."

He looked ahead to what he could only assume was walking dead, he gave a cruel smirk. "Let us test it, I wonder if pushing Doton Chakra into my tails will harden it, but hardening it does not equal damage. Maybe using, Wind for cutting power?" He nods his head, after gaining Hashirama's cells and Sasuke's yin half of Hagoromo's chakra, he has been able to use every single element, plus his edition of Kekkai Genkai. He nodded his head, and channeled the two chakra's into his tails, this in turn caused his crimson, blond tipped fur, turned an earthy brown. When the wind chakra was pumped into the tail his hairs along his tail straightened until his tails reached a dangerous point created entirely of hairs. The Earth Chakra strengthened every single strand of hair to the point they became durable enough to with stand a full length sword battle.

His Pip-buck soon beeped as it started to activate, he was confused as why it started to work, but when its screen activated. It was the color Orange, there was an adorable Nine-tailed fox cartoon figure in his top right part of his vision. On the bottom left of his screen was a huge bar that had the Initials A.P, the bar with H.P was similar in size. But each one had a number, and his A.P points was easily 10 times the amount of H.P. This was a result of his Uzumaki Heritage and Kurama's chakra. Enormous Chakra reserves and large natural regeneration boosted by Kurama's regeneration. He could regenerate lost limbs or organs, and now his body actively purified Kurama's chakra he would regen from heart wounds but he would be out of the fight for likely months.

He fell down to all fours, it felt so natural for him and so easy to adjust to, though bipedal was obvious for fighting. Sensing the place for his potential targets he blurred from sight, his body feeling faster and mobile, he was able to move so quick he left after images, even with his physical powers suppressed. When he appeared again he was in a dead
tree above the creatures that had no life signs.

His slitted violet eyes narrowed on the undead creatures, unnatural, they had nothing he would claim as chakra, what they had in them was something dark and malicious, he would them now. He used a branch and dropped to the ground so the undead creatures would come to him. When they were close enough he stopped balancing on the tree branch he stood on and allowed him self to wall, he back flipped and landed on one of the undead, it was squashed under his weight. His tails struck with the speed of a bullet, piercing the bodies of the undead, he felt the blood on his tails and grimaces. 'So they can, its just disgusting and highly sensitive.' His eyes narrowed as he walked off the currently crippled ghoul who had swirls in its eyes, he ignored.

He walked towards the cabin and frowned, it as run down sure, but it was not useless. His eyes narrowed when he noticed a plaque outside it, he looked to his Pip-buck and saw the date, 201 years? Two years before the war ended in balefire? Hum, it looked like it could be repaired with a few hours of Shadow Clone work, yeah he found himself a home. Until he could get used to his suppressed powers, though until then he had to clean the place up.

He looked inside the cabin and scowled at the awful smell, it smelled like rot, and well decay. He knew why when he saw the burned corpses on the ground stood up and charged him. He spared no though and pulled his Kusanagi out, channeled Lightning chakra into the blade and charged the zombies. They did not even get close to him as they were slashed apart, he was not dealing with their shit. He sheathed the Kusanagi and summoned twelve clones without using hand signs.

Looking around inside the cabin he noticed how it was clean, mostly, It looked like it was never used for housing. Then why are there ghouls here? Looking around with his Violet slitted eyes, he noticed a off colored plank of wood. It was only noticeable to a well trained and skilled eye, it was only one shade darker, In other words not even noticeable. This was good, meaning whatever was here was important enough for them to be here? He looked at those off colored planks. His mind was racing, Sasuke's, Obito's, and Kakashi's life experience was screaming at him. 'Look underneath the underneath.' His sensei said. The Knowledge of all the Mangekyou eyes flooded into him, how to preform Jutsu, how to create new Jutsu, all the Jutsu it had seen. The Mangekyou also showed all the knowledge the regular eyes had seen in the past, he had seen all of.

His eyes widened and he smiled, He bit into his thumb, and pulled his tattered sleeve down to expose his seal on his upper arm. Whipping the blood on the seal causing it to poof, releasing what it held. There on the ground ontop of a towel was hundreds of Sharingan eyes, some were white but the majority were fine. His eyes landed on a certain pair of eyes, they were in their Mangekyou state, a four sided star. Shisui's Mangekyou, eyes Itachi gifted him, and Obito after he stole the eye from Danzo. He looked at the two eyes and smiled softly, Shisui was kind shinobi, he did not deserve what he got. He grabbed the eyes in his skull and used his chakra to detach all the nerves and blood vessels, Doing so caused him slight pain but not as much as it would if he had ripped the eye out. Slowly pulling the eye our caused blood to drip down his cheek. Keeping Obito's other eye in his body he looked to the bloodied eye in his hand and gently placed it into a jar before opening the jar that contained Shisui's. Pulling out the wet Sharingan he placed it into his eye socket, and attached the nerves and blood vessels to it. He also channeled a huge amount of his Sage of Six Paths Chakra into the eye but stopped short of it becoming a Rinnegan. He opened his now Mangekyou eye to show a black crown form around the pupil.

He did the same with the other eye giving him both of Shisui's eyes. Smiling softly Naruto looked at his hands, they looked more focused unlike Obito's and Kakashi's

Walking towards the oddly colored floor planks, his eyes picking up the oddity of how it looked. Grabbing the planks he pulled it open to expose a large well lit room. It was not small by any means but he could see it looked clean just like the room. He jumped down.

After Jumping down, His eyes widened greatly, before the room looked clean and bright, but now? It was dark and dirty, his Sharingan eyes activated. Looking around he noticed the doors, his body moved forward seeming on instinct.

He reached the door in seconds, His Sharingan eyes searching for what he was supposed to see.

He saw through the door an his jaw drooped, inside was huge, something large was in the center of the room, it looked similar to a giant boat. Only it had clouds surrounding it, he saw long pipes extend from the main body of the thing, it was a striking white with blue clouds, Along with the name A.A.F. Crimson Dawn. That name struck him instantly, only thing with that name was Akatsuki!

He looked around and noticed the same A.A.F everywhere, along with the White and blue clouds. He wanted to know why these things were here! He soon got his answer as a small pole in the middle of the room ignited.

Ontop of the pillar was an Orange Earth pony with blonde mane and tail, her flank had three apples, she looked old and tired. She still smiled, "Well if this message activates it would mean the only person who could fix our mistakes is here. So welcome! My name is Applejack, I was head of the MoWT, which is an acronym of Ministry of Wartime Technology. Now you must be confused, because to be honest, so am I! I was told along with all our friends of a hero that will change this world for the better, after we die. Hopefully you can end this war we are probably still in when you are born. I just hoped this would never happen, so much death and suffering, even my brother is gone because of this cursed war!"

She inhaled and calmed herself, "Sorry, everything inside this place is your own, please create this 'Akatsuki' this was a brilliant idea you had, you saved the world." Naruto cringed at the Akatsuki name, "Now I was told, there was an old Akatsuki by pinkie, who wanted to save the world but did it wrong. They may have done it wrong but you are you, You may not understand why the Akatsuki is needed but I... I do.." Her voice trailed off as her pupils dilated, "I cannot tell you but know this, this world... it is no longer Sunshine and Rainbow."

The Image flickered as it changed to become what he had seen in the door, it had a name attached to it. "Raptor #1929 REX model, Code named Crimson Dawn. Owner, Naruto Uzumaki Namikaze, owner of the Akatsuki organization."

He even saw the specs, it was massive stated to be the largest flying machine besides Thunderheads. He was in awe at just how much this ship contained, it had hundreds of things including an Akatsuki Meeting room.

He had to look away, he needed to explore before he chose to stay here.

It only took him an hour to find everything, he even found a few weapons that caught his instant attention. One was a .44 revolver with a stock meant for him, he would see the finger grips. So many weapons that were created just for his use, but they were limited in numbers compared to the vast armory of Pony weapons. He even saw an Akatsuki cloak, he could tell what it was, as it was White instead of black with blue clouds instead of the crimson ones. He was reluctant to wear this cloak but soon realized, it was a different Akatsuki. It was not controlled by Black Zetsu, no it was not. He controlled it, and he would keep it that way. Slipping the cloak on his eyes widened at how soft and light it felt. It was Obviously had armor plating inside the cloak, it was heavier than just cloth but lighter than the Pony armor he saw. Opening his Sharingan eye he saw a huge black mass inside the cloak, it was created from anger and rage, so he started to purge it. Only to make it halfway before his eyes where shocked by something.

looking at the Cloak tag with only one eye open, as blood dripped from his other eye, he saw it. Star Metal plating, requested from MoWT to MoM. He nodded his head.

He stayed inside the Cabin/Akatsuki base, he soon chose to create the Akatsuki only to do it right. The Akatsuki base was truly huge with over one thousand personal rooms for any of his group, it was made for an army to be hidden away. Which is what he will do. His eyes narrowed, he saw the map of the entire country he was currently within the area near Los Unicornia. which was near Las Pegasus, though it was located near the ocean on the other side, unlike Manehattan. or even Canterlot which is located in the very center of the country. He looked at the map and scowled, taking over a country of this size would be difficult to say the least. He smirked as he looked at the location Hoofington, which was a equal distance and the very bottom of Equestria control. Right next to Zebrica. He would expand to Hoofington first, The amount of technology would be a gift.

Though how can he cover his tracks? His eyes widen, becoming a mercenary group who would only accept good mission, not cash. This would give civilians less fear of them, as they would not act as normal mercenary force but instead more like a Military Police force. His eyes lit up, first he needs numbers, how would he get numbers?

While it would be immoral he would use Kotoamatsukami on undesirables, basically he would bandits into proper Mercenary, while he would never use this ability willingly it would be useful.

First he needed to train with his new weapons, and powers, this will take a few days.

After a few days of training with Taju Kage Bunshin no Jutsu he was capable of using every single weapon he was given. though he still preferred the revolver. He soon made his way to a place he found while using his Shadow Clones to search the area. It was abandoned, but it had a few interesting thing, like the huge quantity of Radroaches. It was cleared out almost instantly the clones just found it disgusting, and opened fire with well a slew of .44 ammo.

Inside was nothing important, but a few random items, but he did find a cracked bottle, inside was a liquid that glowed. The bottle had the label Health Potion, he drank it and oddly felt better, his internal new magic source surged. Though he had no idea about this magic source, yet.

He walked out of his cabin, which now looked brand new, though it needed to be painted. He continued his walk, knowing where to go, He flared his chakra and disappeared in a flash of Crimson, his new personal Hirashin seal worked perfectly.

When he appeared again it was over twelve miles away near a small walled off town. His eyes narrowed on his Shadow clones who all nodded and poofed away, he was not expecting to be teleported. The Memories of his clones flooded his mind and he smirked but was internally boiling with rage. Sasuke's personality was starting to grip his control. Looking ahead and he smelt it, the smell of sex and death. His body started to move on its own, his hand lit up with Lightning chakra, the Cloud layer overhead began to darken. He lifted his hand into the sky a trail of lightning reached the cloud layer.

Soon a colossal dragon created entirely of lightning formed in the Cloud layer, Naruto's eyes flared turning into Shisui's Mangekyou Sharingan. He screamed the top of his lungs, his voice easily pierced the heavens. "KIRIN!" He slammed his hand down causing the huge lightning dragon to follow, Naruto's intension was not to kill but to frighten. The huge dragon slammed into the gates, the gate was incinerated by the force of explosion. Naruto could hear the panicked screams of the Raiders within the walls, as their friends on the walls were incinerated to nothing but dust. Pulling out his Revolver, he did one Jutsu and it already tired him out, his chakra level was fine but he was physically tired?

He pulled out his revolver, the raiders were already charging at him, He created hundreds of Shadow Clones, These Raiders were lucky he would only Brainwash them. He needed to have them as his soldiers, he would do dark acts to save everyone. If everyone is saved a little darkness will be okay, as darkness is a part of balance.

The Enclave had no choice but to notice the huge Lightning dragon and it caused even the Minister of the Enclave great fear, they that thing would easily destroy their Raptors or maybe Thunderheads?!

Naruto was currently looking at the gagged and bound Raiders he had captured, there was no survivors in the Raider camp. Naruto's personality was being controlled by Kakashi's. His eyes narrowed on the Raiders. "Do you have any idea why I did not kill you?" no answer, just angry glares. "Fine I was going to be nice but well that wont happen." He closed his eyes for a moment and channeled his Chakra into it, before opening the now Red eye with a black four sided shuriken, along with a crown around the pupil. He looked into the now terrified Raider's eyes who were not able to shut their eyes or look away. "Say good bye to your reality and join me, Kotoamatsukami!" The Raider's eyes became dull for a second as Naruto entered their mind and gave them memories on how they served him loyally and would never betray him in any way, while also protecting the Innocent. Naruto's Mangekyou dripped blood from the eye he had used, the right eye closed from the pain of using the Jutsu. He hissed and replaced himself with shadow clone who would take care of the Akatsuki Recruits.

Naruto entered his room and wipes the tears of blood from his eye, He could use it twice a day, but he would be unable to us ethe Jutsu after both eyes used it once, this was the cost of using such a powerful Technique.

The new Akatsuki Recruits went well, while some were infected by some kind of disease most were just mentally unstable, the ones infected by a disease would have to be cured before they would be considered assets to the Akatsuki. But the Mentally Unstable ones had hard coded morals implanted into their heads by Kotoamatsukami, Naruto's eyes widened slightly as he had an idea.

His progress was slower than he expected, teaching these recruits was something he had not expected to be so difficult. He wanted to get the Crimson Dawn into the Air before anything else, and that meant teaching these Ex-Raiders how to use Technology from the old era. Naruto was not a good teacher and none of his previous teacher would do well. Ero-Sennin was never taught him anything besides Rasengan and how to preform basic Kata. Kakashi taught him basically nothing, Iruka had the same issue. So he had no way to teach them.

Luckily this problem fixed itself as one of his recruits was a previous Engineer for the Enclave, He had no realized it but she was a Previous Pegasus that had her wings surgically removed, Then dropped off at ground level. She only joined the Raiders as no one wanted her, Naruto gave her the Akatsuki cloak instantly, along with the Council ring. She would be in charge of the Akatsuki Engineer school, along with Maintaining his personal ship.

She was named White Sky, she was a white Pegasus with blue and purple stripped mane and tail. She had a branded Cloud and lightning bolt over her cutie mark. She had two scars where her wings would have been, also having a basic Battlesaddle she had a Sniper and shotgun combo Battlesaddle. Naruto was planning on fixing her missing wings issue, but it would take a Medical genius.

Besides that the other Akatsuki recruits were not that important, he wanted Engineers first, they would take a while to learn, but once he read all the knowledge White Sky gave them he would be able to use Kotoamatsukami to gift everyone his knowledge, this would give everyone the knowledge how to run the Rex as it was just a larger version of the Raptor. An while the Crimson dawn was larger than the usual Rex it was still smaller than a Thunderhead.

He needed guards/soldiers for the place, he would use the ill recruits but he was not sure they would not eat someone.

He looked to White sky and used his fingers to create a cross and whispered, "Kage Bunshin no jutsu." Twenty clones appeared and looked at Naruto for a moment before nodding and grabbing the books White Sky had stole from the Enclave an kept safe. These books had the actual knowledge of the Rex and Thunderheads, how to build them, along with Raptors, these books were actually found by White Sky after she was banished.

Naruto looked ahead and nodded, "Sorry, White sky but I have to go get more recruits. I hate how they do things but not them as ponies. They are just misguided or ill, it does make them evil, but I wanna can fix that." He smiled brightly. White Sky blushed and nodded.

Naruto saluted and vanished in a burst of crimson light. White Sky looked at where he was and sighed happily. "I will help you however I can, even without that Illusion you used on us."