Fallout Equestria: Shinobi

It had been a few hours and now Midnight Blade was under fire by Raiders and Flak cannon, she was panicked. She only had control of flight Controls, she had no access to weaponry. She also could not let go of the controls as that might cause the plane to get hit and then loose control, she only had one option, kick the plane into high hear. She flipped open a panel besides her seat, the words Jet Engines, was above it. Inside the panel was a single lever, she grabbed it with her hoof and slammed it down roughly.

Her ears pulled back from pain as a new sound entered her ear, it was the sound of screaming metal.

Outside the plane one would see pieces of metal on the wings pulling back to expose a Jet engine, said engine roared as flames spat out.

Her ears started to bleed slightly from the intense sound, her eyes started to water, then it stopped an the plane lurched forward. The Speed of the plane suddenly skyrocketed, to 120mph to 300mph,

She was slammed from the G force into the seat so hard it caused her vision to swim, the plane though burst through the air.

The force was bearable after that initial increase of speed, soon the plane was flying over the ocean.

The Plane was rushing back to Equestria, the mission was a success but Team Peace was not ready for it. The Plane was flying perfectly, It would take a few hours before they arrived into Naruto's chakra reach. Through the entire ordeal Zephyr was slowly crawling along the ground, his body was getting harder and harder to use, before long he would not be able to move even slightly.

While the plane was sturdy and powerful, it was not built for constant use of the Boost, that caused the speed to reach near Mach 1. Yeah, the Jet engines allowed the plane to reach near Mach 1, the plane was moving quickly. She would be damaged for what Midnight Blade was doing but Naruto would Use Steel, Metal, and Mech release to fix any damages.

The Boost suddenly shut off leaving the plane located in the very center of the ocean, The plane started to creak but it sounded fine.

It would take a few more hours till Zephyr made it to Midnight as he started to move slower and slower, slowly his body failed his will, and he collapsed unmoving like all his friends. Just a corpse on renew plane, but that suddenly changed as they reached Naruto's Chakra Influence.

Their bodies gained back a little color, then Jar-nee and Sipho Twitched, Jar-nee's jaw worked silently. 'Summoning jutsu...' He used the last of his Chakra to summon Naruto to their location.

Naruto eyes opened widen, "Whoa!" He looked down at the deathly pale Jar-nee, "What happened?!"

Jar-nee gasped slightly as Naruto's chakra flooded their bodies. "C-chakra loss, sudden, powerful, stunned." Tears began to form at his eyes, Naruto nodded.

He preformed the ram hand seal and pulsed his chakra. Almost instantly their bodies gained their colors back and their illusions formed over their bodies, one could see how scared Jar-nee was. Sipho pushed her self up and groaned, "Wow that sucked."

Jar-nee nodded a little shaken up. Naruto was already thinking of a way to fix this issue. What if he placed Chakra receivers across the planet would that extend his chakra reach, this would be possible but still it would take years for it to work.

"Boss, how bad did we fail?" Sipho asked her voice quaking from trauma.

"None of at all, I should have expected this, your bodies run off of my Chakra." His eyes narrowed, "This was my fault, I wanted to see how Capable your team would be at running the Dancer, and I forgot how to keep your alive." He frowned, "It was my own failure, do not blame yourselves."

On the other side of the plane, Naraka and Lo-mi pushed themselves from the ground and looked at the panicking Midnight Blade.

Naraka smiled and placed her hoof gently on her shoulder, "It's okay now, Boss is here." Midnight still had a crazed look in her eyes, She pulled her into a hug. "Shh, relax no one died, everything is okay. Look at me." She did so her crazed panicked eyes landed on her, "I am real understand? No one is dead, we were only paralyzed, we all were only Paralyzed." Her eyes started to relax, "Naruto is here okay? Calm down, we have a mission to complete remember?"

Zephyr reached the room in a soft Jog, "Is everyone alright?! I tried to make it when I felt how low everyone was on energy but it happened to me suddenly also!" His voice was panicked, but it calmed down when he saw the situation, "Oh good, everyone is fine."

Words suddenly filled the Paths of Peace's heads it was Naruto talking to them. "Bad news, I just got a recent report, The Enclave are sending down a scouting mission, to Old Olneigh. We must to observe, it will only take us... 3 hours? Yeah Three hours until we arrive."

Naraka took controls from Midnight who sat in the Co-pilot seat, The rest of the team was more shaken, all but Sipho and Zephyr. Both Ponies kept their team calm. Naruto sat down and meditated, this would likely cause him to use Sasuke's Susanoo. Maybe,

Through the entire Journey the ponies slowly calmed down, they started to smile.

Naruto's Pip-buck chirped, He looked at the ground a few thousand feet, he then jumped forward. His body started to rocket towards the ground, he closed his eyes before opening them in a flash. His body slammed into the ground, he instinctively bowed his knees to absorb the shock, then he blitzed forward. He slipped his mask on over head, His single Sharingan eye poked out from the orange swirl mask. He pulled out his .44 revolver and loaded Armor piercing rounds, he could hear the Dancer fly silently behind him.

His eyes focused on what was in front of him, he soon detected a weakening magic signature, he moved towards it, when he did he discovered more stronger magic signatures.

Great, he was not prepared for actual combat, he wanted to get the mare and teleport to the nearest base, which was... damn! He just realized he was out of range to teleport! Snarling he burst into the scene of Steelrangers.

His Sharingan eye flashes as he preformed rapid Hand signs. "Mokuton: (Wood Style) Four Pillar Prison!" Naruto shouted causing the Steelrangers heads to snap to him, he slammed his hand to the ground. Instantly wood erupted from the ground and engulfed the Steelrangers, they did not have enough time to even panic. Naruto the did a few more Hand signs, "Kekton: Prison Barrier!" he slammed his hand on the ground again created a huge barrier around the wooden prison that will fade after a few hours, just like the wood.

Naruto launched forward grabbed the injured pegasus mare, who was missing her leg. He did not want to kill anyone, and these Rangers will find out soon how their entire group will join him. He looked at them with his Sharingan eye, "Hia! Im Tobi! Im sorry about being mean, but my subordinance told me about little miss here, don't worry all knowledge we learn from here will go directly to you. It's a fair trade right? You don't wanna deal with a injured pegasus, while I do, but you want her knowledge that's fine! Heh, don't worry I already have your Power Armors signals, I will be sending... Uhh. Who? Oh I know!" 'Tobi' points to a stallion in Power Armor, Rumcake, "You! Yeah that will work, Uhh, Oh I know Tell your..." He blinked, "Elder? Yeah Elder! Tell your Elder the Akatsuki is Watching, and if they want help us message me! Bye bye!" He then vanished in a puff of smoke.

Naruto appeared back on the plane with Jar-nee looking at him, Naruto held the Bleeding Pegasus. He then did another set of hand signs, "Jinseiton! (Life Style)" Her body glowed as his magic and Chakra entered her system, her missing leg started to heal but it did not grow back. Naruto wanted her to have two Mechanical legs. "Kiton! (Mech Style)" A new Biomechanical leg started to form at the end of he missing leg. He channeled more Chakra into her, adapting it to he magic pathways, he did the same with her actual hoof, and body. Metal formed around her body not replacing flesh but overlapping it, giving her a intense strength speed and agility boost. Her other front hoof grew similar claws, her back grew metal plates. Her wings soon formed metallic feathers that functioned and acted just like organic ones only with more durability. Naruto had started to sweat from the intense Chakra and Magic drain. He continued on though. Soon her ears became partly mechanic allowing her hearing to spike, he also changed her eyes for mechanics also.

Some may wonder why he is doing this? Well because she was the perfect test subject for safe Cybernetics, also they were retractable as they were now part of her body like her hoof or wings were. She could control them with ease.

Naruto also gave her a cybernetic horn that will not be functional until her body and magic adjust to the changes. By the end of it Naruto fell over sweating, He was slightly pale but still healthy, he had to use Kekkai Genkai for things like Genjutsu and Healing making him have to use more Chakra for simple things.

Jar-nee was by his side in a moment, he only smiled. "Its fine." He pushed him self up, and walked to Frosty Winds, He opened her right Foreleg to show a screen, he turned it on with a dash of his magic, He tapped his finger on it an suddenly all the armor was absorbed into her flesh. She now looked like a normal pony with a cybernetic leg, but she will find out soon her ears and eyes have not been changed until they are activated. He smiled, She will be a normal pony, a pony with so many powers.

His Pip-buck dinged, He looked to it and sighed. "We can return to Las Unicornia Airport."

Sipho groaned, "Can't we land at a longer runway, or maybe a closer one?"

Naruto shook his head, "We need to keep it constant, the less the Enclave thinks about our existence the better." Those words caused a instant reaction from the Pegasus in the room, whose eyes shot wide open her eyes darted around. "Well, maybe I should have been quieter." He chuckled, He pointed his hand at her head and whispered. "Health Release!" part of Naruto's life force entered her body causing the Pegasi's body to relax. "Better miss?"

She stared a the weird new creature, "What are you?"

"Oh! Im Naruto Uzumaki Namikaze, Leader of the only Military on the surface that is not corrupt or evil. An im a Nine-Tailed Fox, a entity of great power and kindness." She just blinked once. Naruto blinked when she did.

"Sorry I am just confused as to where I am?"

"Oh right! Your inside my plane." her eyes widened. "You are free to leave if you like, but the Enclave will just execute you now, I would prefer it if you actually lived."

"Why would they execute me?"

Naruto sighed, "Well while you were asleep I had to replace that missing leg with what you are using now." Her eyes bugged out and stared at her Mechanical leg. "I Built that, its impressive no?" He looked to Jar-nee, "Oh and this is Private Jar-nee of Akatsuki Devils.

"He's a colt."

"With training to take down a full grown mare or stallion, he's a medic though."

"Well what can I do?" Naruto smiled, she could not help but smile at seeing his honest happy expression.

"You can join us to save the entire wasteland, or you can leave and go join someone else?"

"How can a small group save the wasteland?" She ask incredulously.

Naruto smirked and pulled his hand up to his face and pulled it down to expose his Rinnegan eye, "With the help of my God-like powers of course." He then pulled his hand away allowing his eye patch to cover it.

She looked at where the eye was and nodded, "I will join you, I have a feeling you will actually save the wasteland."

Naruto chuckled, "That is the plan, this world needs an Immortal God to keep them protected." Naruto's acceptance of his God status did not make him Cocky or Arrogant, he was still humble but not afraid to use his powers for others.

Naruto looked to Frosty Winds and nodded, "go ahead and rest, you will be armed for war when we arrive to base."

It took a while before they arrived to Las Unicornia Air Defense Station, Naraka had taken control of the plane and started to gently point the nose of the plane down, when she reached a hundred feet to the ground she pulled the nose up. She pulled the engines back and allowed it to glide for the next 300 feet before her back wheels hit the ground and she used the brakes and Thrust reverses.

Naruto cringed from the bumpy ride, "Still need some Practice Naraka?" She blushed but nodded, "Fine we will get the Flight Simulation on so you can use it. I though for sure the knowledge I transferred into your brain would suffice."

Frosty Wind's ears perked up at that, but Naraka spoke before she could ask. "No Muscle memory, need that to fly a plane as wheel as a master pilot can, Midnight would be better for the training, im just a trainer."

Naruto nodded, the plane continued on its path until it arrived at the Hangar, Zephyr was the first one out who looked around.

Naruto flashed next to him along with the rest of the ponies, his single eye looked around and scowled, "Where are the Technicians?" This was not normal. "Jar-nee, Lo-mi, Naraka, and Midnight Blade stay here. Frosty Winds, Zephyr, La-ma and Sipho with me, Team Plane Lo-mi is in command, your mission is to protect and secure the plane and keep it ready for emergency extraction. Engines Hot, weapons ready, Jar-nee summon your team if you need heavy weapons support, Lo-mi stay with the gunner stop."

Naruto looked to Frosty wind and scowled slightly, "Here." He unsealed a small suitcase, "Open your present, it had the ammo already.

Frosties eyes widened and smirked, she opened the case and saw a beautiful gun, a Anti-Material rifle with a 50BMG caliber. She noticed the magazine had black tips, Armor Piercing, She whistled. "Geez these look freshly made, how did you get these?"

"Made them just now." He said honestly, he used Mech Release to create the weapons, and ammo from memory. Her eyes bugged out but she giggled gleefully.

"Yes!" She grabbed the gun and started to put it together eagerly, Naruto smiled but gave her a new suitcase, her smile grew and she cheered "Sweet, What is it?"

"Your Secondary, a custom weapon of the Akatsuki one I personally designed." She opened the suitcase and saw a double barreled pistol that looked like he molded two guns into one, the barrel was wide but the grip was built for a Griffin just like the Anti-Material rifle. The Pistol had a scope and two suppressors, she picked it up expecting it to be heavy or uncomfortable for her claw, but no it felt like it molded to it. The Weight was not even there, it was nimble and easy to use.

"She is named Blizzard, she shoots cyro bullets that actually do what they are supposed to do, she is an Automatic pistol with a few thousand round in a clip, I used some Space-time Seals and magic to make the magazines huge. It also Auto loads, You have two clips, the pistol is Capable with almost all pistol rounds except the larger rounds, but you have to use the switch to change the caliber. She is by far the most useful gun in the wasteland, she cannot shoot .44 .357 or gov rounds." Frosty Wind's eyes sparkled. The Raider part of her mind started to giggle.

Naruto looked ahead and pulled out his Revolver, He grabbed the eyepatch covering his Rinnegan eye, he pulled it off and placed the Tobi mask over his face. "Hia Im Tobi!" He coughed as his voice was deeper then he liked, "Hia Im Tobi!" He nodded his head, He saw Frost looking at him weirdly "What Tobi is trying to get his voice right, Tobi thinks Raiders are fun to scar in funny ways."

"Your weird, but who am I to talk?" She shrugged, having already talked to her alternate personalities.

"Tobi says we go now." Naru- Sorry Tobi, Frost, Zephyr and Sipho walked forward. Sipho soon vanished and ran off to find any survivors or enemies. Naruto and Zephyr used their Sharingan and Rinnegan to find anything odd.

They arrived at to the door of the Base and pushed it open only to see a standing frozen still Sipho, Naruto's eyes narrowed seeing this, she would never loose the element of surprise. He followed her eyes and froze also, Frosty Wind being concerned walked to her not to quietly.

Naruto grabbed her and covered her mouth with a shocked expression Frost squirmed slightly before relaxing. Naruto's Sharingan eyes morphed into Sasuke's Eternal Mangekyou. "Damn, Zephyr take Frost and Sipho and go!" He nodded and grabbed the two before vanishing in a puff of smoke. Naruto's eyes never left the threat known as an Alicorn, a purple one.

"The Goddess wishes to meet you." She says all to calmly, Naruto now understands why his men ran in fear likely. An Alicorn.

"A Monster like you? Nah, I like to be myself and not be molded into that creature." He shivered in disgust, the Alicorn's eyes narrowed.

"You have no choice!"

"Do I?" He looked to his hands and frowned, "Im sure I have one, Defeat you in a battle."

"You dare destroy the future of pony Kind?!"

"Future? FUTURE?! A future of slavery? A Future of becoming monster? Mindless monster?! I am fixing this world, Actually fixing it! Trees that grow use Radiation as Fuel to grow stronger, Grass to turn Radiation to Nutrition for the soil. My trees have the ability to Absorb Radiation, and Soon the Pink Cloud will also be gone! Enervation? I will deal with it! Your species will be useless, a past mistake that needs to be eliminated. Why would Twilight create a monster like you?! Trixie you could have actually helped ponies, or even build love instead of fear" Naruto sighed and rubbed his face, "Your just Like Madara, Pain, Obito, an Sasuke. So twisted to your own faith you think you can only be right, well I have news for you!" He pointed at her and smirked under his mask, "I will take the hate of this world! I will mold that hate into love! I will fix all mistakes from the past, I will make fear into hope!" His Sharingan eye flickered suddenly to purple and rippled, it also had the six tomoe. "I will change the reality of the past and mold it into a bright glorious future! That is my Organization, The New Dawn! An Organization built on kindness and power, Serve those under us and expect the same!"

He pointed at the stunned Alicorn, "An You stand in my way, I will fix that broken heart of yours, an that is a Uzumaki Promise." His heart suddenly ignited with his emotions, finally he was back, the Naruto we all know and love had returned. "An I never break a promise that's my Nindo! My Ninja Way!" His magic suddenly spiked, golden embers lifted off his fur, his Nine orange tails started to change color behind him. "I am Uzumaki Naruto! The Hero of this World!"

His body then exploded with golden embers they engulfed him in a stream of magic flames, His single Sharingan eye started to flicker to a Rinnegan.

The Alicorn was forced to step back from the intense magical presence, it was so bright and powerful but it was not painful. Naruto's head was pointed to the ceiling, his Sharingan pupil dilated, his body was coated in Ethereal golden flames. It was not Kurama's chakra though, it was Magic. Naruto's head snapped back down and he smirked, "So? Wanna play?"

The Alicorn teleported away, Naruto relaxed and the Magic exited his system but remained just in reach for him to pull and use.

He slumped back and started to laugh, "Finally, Im back baby! My heart was closed from all the Trauma I felt, no wonder everything felt so numb!" He was smiling and actually felt his joy again, "I can be the leader my people need now, smile when one else smiles. Now I know peace can be achieved! I will strive for that goal, I will make these eyes of mine seen as Pure and Godly not evil and monstrous."

His eyes focused back on the here and now and saw how Frosty Wind looked at him with a huge smile, "Wow, you sure know how to give a speech?"

"Nope, that was all a spur of the moment deal." He chuckled.

"Really? If that's the case you said all that from your heart?" Naruto smiled brightly behind his mask and nodded. "Cool, um so what will my job be?"

Naruto looked at her for a moment before blinking. "You will be part of a Special force known simply as Akatsuki Devils, your jobs will be to do missions beyond normal Soldiers, some are Super Soldiers like you."

"Wait im a Super Solider?" She tilted her head in a cute manner.

"Well, while you were asleep I took the Liberty to give your body some modifications, You will find out soon you are no long just a Pegasus." Her eyes shot wide open at that and looked at her wings and exhaled, "You have horn, an you may have cybernetic attachments. Don't worry though you are still Frosty Winds, I just made you better. Truth is you don't have to use them, you have absolute control on them. Just thing about changing your right hoof into a claw."

Frosty Winds nodded but did not try it, "So im a Super Soldier?"

"Yep, Like Zephyr, Sipho, Jar-nee, Lo-mi, La-ma, and Naraka. Though they Specialist in one certain Area."

"Okay what is it?" Naruto looked at her for a moment before shrugging.

"Sipho has the ability to control gravity, able to make unstoppable gravity waves La-ma can change her entire body into machine creating cannons out of her hoofs an whatnot, Zephyr is able to suck the souls of ponies and witness their memories. Jar-nee is able to summon animals, me, or the rest of his team. Lo-mi is able to absorb magic in any shape or form to fuel herself. An Naraka can heal anyone by using the same ability of Zephyr, but instead heals them."

Frosty Winds eyes were wide, "Okay so each one has amazing powers?"

Nope! Lo-mi is quite weak alone without a team to Back her up just like Jar-nee, and Zephyr is the Crowd control so he can take care of himself quite well. Naraka is a healer not a fighter but she rarely uses her powers so she is the teams support. Lo-mi uses Power Armor to balance out her usefulness. Sipho is a Spy/Assassin, and La-ma is a explosive expert and like a Steelranger.

"So each one balances each other?" Naruto nods. "So, what team will I join?"

"My Personal team, You will be join me personally, not as a guard but as a Advisor." She tilted her head, "I mean I want you to be the General of our Pegasi, who may or may not still be frozen in ice." She made a O with her mouth, "So we need someone to train them in proper Military procedure, while I could just just transfer knowledge to them I want them to be properly trained. So no Short Cuts, but we only have a few months, can you do it?" She shook he head.

"Sorry im a Solider not an officer, I take orders not give them, its hard to change the mindset of being a soldier." Naruto frowned but shrugged, "Sorry."

"That's fine I expected the answer, well you pass the test, you know when you are beat. You will actually be joining in a Team built and lead by me, we will be doing SS-rank Missions."

"SS-rank?"

"Yeah missions have high importance, now in the wasteland the missions will be all including, water hip collecting for towns. Protecting our towns from small raider groups, Caravanners. Our Organization is a Merc group that always does what's right no matter the cost.

"Okay!" She smiled and nods.

"Boss, we should get to base, an Alicorn can cause a huge freak out among the ponies within out care." Naruto looked to Zephyr, he nodded. He called the rest of the Team back to him, it took no time for the rest of the ground to meet up, When they arrived Naruto Teleported them all to his base Vault 1, directly into his room.

Naruto smiled at looked at his group his mask off, he gave his famous foxy smile showing a little to much teeth and chuckled. "Today was fun right?"

Cue massive Sweat drop.