Fallout Equestria: Shinobi

It had been a few days since the Akatsuki had adopted Frosty Winds, Naruto was constantly searching for Pegasi that had fallen from the Enclave, soon he gets a message from his spy.

"Great! Okay Team Peace." The ponies in question perk up, "We have a Pegasus we may to recruit only it will be harder then Frosty Mane, she is very meh who she follows, no offense." Frosty Mane shrugged across the room and continued fiddling with her new griffin IF-88 shotgun. "I also will be joining you, you need the Leader After all."

Naruto grabbed ahold of his team and flashed away, leaving behind Frost, Blitz, Gabby, Frosty Winds and Midnight Blade, otherwise know as Team War. Team Peace and Naruto all appeared in the center of a Firefight between pegasi.

"Geez!" Naruto yelled, Naruto jumps into the fray. Team Peace started to open fire on the Raiders. Sipho disappeared and reappeared behind a raider with a knife stabbed into their artery, She spun around and vanished.

Naraka flipped a switch and two Reticle appeared in her vision she soon opened fire with boom of fire, Zephyr had opened fire with his Minigun and Shotgun. La-ma was laughing like a maniac as she opened fire with her Missile launcher and Auto Grenades. Lo-mi was by their side and taking down any stragglers, Together the three Steelrangers were almost unstoppable. With Naraka by their side using her Sniper to take down any flankers, Jar-nee was siting back and watching.

Naruto had arrived at the Side of the Pegasi, they were injured but not Deathly. He looked to the Raider group and scowled, He shouted. "USE YOUR EYES!"

Their ears perked up and grinned, Sipho appeared before the ponies and pointed her hoof at group of Raiders, "FEEL THE WRATH OF A ANGRY GOD, SHINRA TENSEI!" She screamed at the top of her lungs. The Force upended the soil to three feet deep, a huge wall of energy erupted from her hoof 20 feet wide, Anything in its path was sent flying. None of the Raiders Survived the action. The ponies he was sent to save were injured but still alive, some needed new parts but he needed them to remain loyal to the Akatsuki.

"Sharingan: Genjutsu!" The ponies all twitched slight before vanishing, there that had my memories of arriving here and the trust of the enclave.

Naruto blurred and appeared next to a Injured pegasus, she was covered in blood but still awake, "Damn your a difficult pony to track Whirling Feather." She squirmed as if trying to escape. Naruto placed his hand on her back causing her freeze in fear, "Healing Aura." Her wounds started to close easily, "There better, any more pain?" She shook her head and looked back at him only to scream

Naruto blinked, "Huh that was the first time I gained a response like that, meh." He shrugged, "Hello im the Leader of the Akatsuki, we just saved from Pegasi of a Downed Vertibuck, Sadly some of the ponies were dead." She hung her head in shame, "Don't worry, four ponies survived, an sadly what will happen to them to keep them that way will make them unable to return to the Enclave."

"W-what do you mean?"

"Cybernetic Enhancement, some lost an eye or an leg, bones shattered, I just though to replace all their limb with Mechanical replacement but im not cruel of evil. So I Deicide to make the situation better for all involved." He looked into her eyes and smiled, "Sorry, Sharingan: Genjutsu!" Her mind was implanted with new knowledge, and an new emotions.

"Woah." She blinked in confusion, "Head rush, but I don't think the Enclave it self is evil just some ponies in control. Though sure why not the Enclave wont last any longer, and the Akatsuki will thrive, changing and bending. Fighting for Peace just like what I want, because Peace cannot be achieved with Weakness."

Naruto nodded and smiled, She disappeared in a also, Naruto made his way to the Vertibuck which was still intact, just damaged, Naruto tapped the Vertibuck and used his Mech style and fixed the entire machine, He also scanned the vehicle, he smiled and gave it a name. "Thunder Bird." The Vertibuck disappeared in a flash.

Naruto looked back at his team and smiled. "A few more months and Little Pip, Blackjack, Silver Storm/Hired Gun, and Puppysmiles will be here. After that the Akatsuki will be Exposed for what it truly is, a Super Power with a idea of peace and love. An idea of power and love, Keeping Children safe from war but ensure adults know how the world once was, to ensure it never happens again. Bring peace and love to the world, the world will loose this cloud layer and show everyone the sky again." Naruto's Sharingan eye ignited, "Then I will show my full power to the world, The Enclave is to big of a threat to be defeated by Military Might alone, I would need equal number of ships and men to even stand a chance, but we lack that. So Instead I will be the Weapon and the leader, I will be the Shinobi no Kami of this world and bring an era of peace to the world."

Naruto looked to his team and they all smiled also, "Lets go guys!" he flashed next to them and flashed away.

Naruto appeared in the Devil's hall, and smiled at his Huge team. "Alright guys, Today we will be training Frosty Winds." The mare in question blinked owlishly. "She needs to learn how to fight with her new additions."

Frosty Winds made an 'O' with her mouth. "Well uh, how will we do that?"

"Heh, We will be using the most painful Process the Akatsuki has." The ponies expect for Frosty Winds paled to look like ghost. "Bell Test!" The ponies in the room looked at Team war with Pity, Bell Test was what Naruto did to train all the ponies and he was not gentle.

The Group was outside, "Okay since you guys are missing one guy we will have to use a stand-in. Sipho will join." Sipho Appeared looking pale, only Team war were not pale, "Now know this, it will not be like Military Training, this training is meant to make you understand things about fighting a more powerful opponent. Your mission is to take these bells from me." he held the bells up and attached them to his belt, "You are allowed to use any weapon, try and kill me is your mission, But I will be trying to knock you all out." They nodded and Sipho prepared to go Invisible.

"Start!" Naruto blurred from reality and appeared before Blitz the fasted of the ground and punched him in the chest sending him flying before his mind could process what happened. Naruto backflipped landed on his hands just before Sipho's bullet through the space he was just in. Sipho opened her eyes to expose the Rinnegan and Sharingan, "Shinra Tensei!"

Naruto pointed his hand at her and said the same words, "Shinra Tensei!" The Two attacks clashed forming a shockwave and a dust cloud. Naruto's eyes narrowed at seeing the ponies were missing. "Good you can hide." He complimented even though he knew exactly where they were, normal ponies would not be able to find them, that's all they needed.

He grinned, 'I hope they figure out the purpose of this test.' Seems his hope was not misplaced, Sipho appeared behind him suddenly and slashed at his throat, he ducked back, stepped back only for her to disappear, A gunshot was heard and Naruto ducked down allowing a bullet to pass over his head, He looked over to his right and saw Blitz standing there smirking. Naruto then heard a louder gunshot, '50BMG' He activated his Sharingan and spun on his heel to avoid the bullet. Frost appeared before him with her claws clenched, She swung at his face, Naruto bended his back under the punch with a whistle.

Before he could react Midnight Blade had snatched the bell, Naruto's eyes shot wide open at the speed she displayed. "Well that was unexpected, though it is impressive."

Naruto looked around and smiled, "Well I am going back to bed, Im tired. We will wait for a few months before we do anything else to calm down any suspicions about us. That means you all have few weeks off while I try and stabilize the army."

They nodded as Naruto flashed away

Naruto looked at Obito's eyes and Shisui's he started to channel the of either eye to both eyes. Soon they changed, Shisui's eyes gained a sharper edge. While Obito's gained a thicker point, looking almost identical to Shisui.

Naruto grabbed Sasuke's original eyes and pulled out a huge amount of Itachi's chakra, he slowly placed Itachi's chakra into Sasuke's eyes. The eye gained a more defined blade with black tips.

Naruto smiled and he finally had a gift for his Sister, "Hey Sakuse, I have a present for you!"

The Smaller Fox girl entered his room in a hyper rush, "Big Bro!" She jumped into his lap and he chuckled like she giggled.

"What is the present big bro?"

"Well I was thinking, you need a way to defend yourself so I thought, I would give you the eyes of the brother of my best friend. He would have wanted his eyes to be used for the love of others, and to bring peace to this world. So here they are, you will be going into Surgery later to get them implanted."

Sakuse looked at the small black eyes, "Why now?"

Naruto frowned, "Because I need help little sis, I'm not all powerful, I have limits. I want you to help me, Join me in my mission for true peace, not forcing others. That is not peace."

Sakuse looked at the eyes then to Naruto's own tired eyes, "yeah! I will help you." She scowled, "No Surgery though, I want you to do it, I trust you more then Doctor Black."

Naruto's mouth dried, "It will hurt."

"That's fine I can take it, I wanna be powerful like you."

Naruto sighed, "Okay little sister."

Sakuse was now laying on the medical bed, with Doctor Black watching the Procedure, Naruto stood over her his eyes formed into the Sharingan.

He his moved as his Chakra detached the nerves and blood vessels from the eye without harming a single one, the eye was perfectly removed, he pulled the eye out gently knowing the sudden darkness would scare her. He placed the Fresh violet eyes into a jar, he then placed those Sharingan eyes into her socket, knowing she would gain Itachi's Abilities. He reattached the nerves and blood vessels not spilling an ounce of blood. She opened her eyes suddenly to expose the Eternal Mangekyou eyes, "Everything is so clear and focused."

Naruto smiled, "Good, it means it worked. Now I have to train you in the use of those eyes."

4, months, 2 weeks, and 6 days till the likely time of Little Pip's arrival.

It had been a few months since Frosty Winds and Whirling Feather, who fully accepted the truth while her team stood by her even though some lost limbs. Sunshine lost a eye, and Striker Twins lost wings but had mechanical ones replaced that feel and work exactly like their organic ones. Hurricane was covered in scars but otherwise fine.

The Team Pegasi of the Akatsuki Devil was formed, They had done well in their test, so well in fact Naruto had placed them aboard the Crimson Dawn as a Scout and Assault team when it was deployed. Team Peace was also placed there but for good reason, they had to stay near Naruto for the max chakra.

It would not be much longer till the new year a month or so, so the Akatsuki would start to build more and more secretly. The Akatsuki had become stronger then Red-eyes forces and now they were going to keep it secret the best they could, Naruto had been using a form of Mind Release of Raiders, Slavers, Bandits, or even corrupted mercs. His army was growing at a constant rate, while he did not enjoy the fact he was turning others into puppets, it was needed for this world. This was unlike The Elemental Nations, that world was okay and living while this one was dead or dying. He was trying to revive it an the only way possible was to bring peace, he still help onto his views. He needed to take all the pain, anger, sadness and everything he could onto himself.

The Akatsuki had started to grow and grow, it would not stop. Naruto would never let it stop growing, his life was eternal, so he would ensure he stayed alive long enough to keep this world safe.

Naruto was sitting at his desk in the Overmare's office in Vault 1, now named Kage's Office. He was reading the reports on the wasteland and groaned, nothing had changed, Homage had not found anything significant. She was also working with them with suspicions, but Naruto trusted her, he trusted her a lot.

He was looking the reports and scowled, he would be sending Team Peace to go land in the nearest location to Marefort, where they would set up a portal room to allow them to teleport back to base. Team war was headed to a cave located ontop of a mountain, the One that contains Spike the Dragon.

Team Pegasi will stay on base as a defense unit, who will be used in battles.

Naruto was Building Team hero, but it would not work without said heroes, Naruto also to watch out for Scoodle, he had to ensure her life would be saved. While he would not save her in front of Blackjack he could bring he back to life. He would also have Blitz take those children from Blackjack's care, he would then save them by Mech Release. His eyes narrowed, he could take the things from Blackjack but she needs to learn. Though he would ensure those who died from her mistakes would not actually die.

The Akatsuki had grown into the Main of Equestria by now, the numbers had reached 20 to 25k, with 4,000 to 4,200k activate agents. The Force had grown also, now it was by far the strongest military by far but still would get squashed by the Enclave. Knowledge and talent has no benefit against Experience and skill, none of the pilots in the Akatsuki has any real combat Training only Simulations.

Naruto was currently setting up military stations across the country now that he had the numbers to defend them properly. He looked at the Pre-war issue Military map, it was old and moldy but it still worked. "We have a new base, this one was a Harbor for Battleships, Though it is empty."

Sakuse looked at the map and smiled, "We can construct our own Battleships?" Naruto nodded. "How long would it take you to build a Aircraft Carrier?"

Naruto tapped his chin, "Maybe a few days of total Chakra and Magic Exhaustion, but it would be done in a week from using Sage mode and Mech, Steel, Wood, and my Asura Path to create a fully armed Aircraft carrier, with all the planes that go with it. Battle Ships would take longer, as I would have to use seals for armoring them up."

"Well why don't we do that?"

Naruto sighed, "To do that we would have to expose my powers to the Enclave, while I alone can defeat them I want to allow Pip and Blackjack to be here first, that would allow me to have some wiggle room. Not being a huge threat in the Enclaves eyes would be a bonus, right now they think of us like a weaker red-eye without all the tech and power just a huge Merc group."

"So why not just take the land?"

"Again issue, we have not been spotted in the East coast only the west Coast, while we have vaults and bases they do not wear our colors. They wear general Merc clothes, to ensure their secret, we are a Secret organization built on protecting ponies under us by any mean."

"Sometimes to protect the light you must accept the dark?" Sakuse asked tilting her head.

"Yep." Naruto smiled, "It's about balance."

Naruto's eyes narrowed, he only needed a few more months and then he can expose his power, expose his wishes. Expose the Akatsuki and bring forth the Speech he needed, He would channel it across the wasteland, DJPon3 and other stations would be Hijacked by his message. He would do it there and then, he will send the message right before the Akatsuki Join the battle between the Enclave and Red-eye. He would also prevent the Balefire detonation in Maripony, he would ensure Steelhooves is not killed.

He had so many things to do on that day, but now he will wait and build his forces, playing the weak and the foolish. The longer this act was there the more powerful he could build his forces, he learned this in Konoha, the stupid and weak are not hunted as much. The Stupid and Weak are left alone for later disposal. Just how the old Akatsuki treated him, attacking the other Jinchuriki before him, and when they finally moved to take him, he was strong. This is his tactics and everypony in organizations fell directly into trap.

He was prepared for a full scale war, was Red-eye and the Enclave ready? He didn't think so, Red-eye lost the war in the Original timeline, and the Enclave was disbanded as they had not expected such powerful resistance.

He shook his head trying not to spoil the surprise, for the Audience, an himself. Wait what did he just think?!

The Akatsuki kept building at a rapid rate, soon Raiders in the West has disappeared only with a few ponies doing similar things. Though these ponies were captured and either executed publicly or forced to join the Akatsuki via Kotoamatsukami.

And soon the West half of Equestria started to grow as ponies looking to settle down joined up but it was mostly detached from the east coast by Akatsuki rule. There were not many Caravanners traveling the vast desert in the center, though the Akatsuki started to spread out easily.

Before to long the Akatsuki had build into the east coast but only as a Merc group for Caravanners and other peaceful groups. An the pay was cheap while they were effective guards. Their Cloaks gave them away easily but soon the Cloaks had not been used instead replaced with an Akatsuki Military armor.

Sakuse and Naruto were standing inside the Crimson Dawns Pocket Dimension, Naruto had his Eternal Mangekyou Sharingan activated while Sakuse had her activated also. Sakuse looked at Naruto, "Read big bro?" Naruto nodded.

When an unheard signal went off both disappeared. Naruto was Faster so he appeared before Sakuse quicker then she could. Though she moved with an accelerated agility, and spun on her heel delivering a spin kick to Naruto. Naruto blocked it with his arms, but still he was sent flying by the superior power his Sister had. Naruto back flipped to slow to movement before landing his feet on the ground and skidding back.

Naruto smirked as the bruise on his arm healed, "Geez you sure are getting powerful, And this is without any of the boost I have? Impressive, you could easily be Kage level. Likely able to take down those eyes owners Itachi, though you both would have to use them."

"That's enough I wanted to test your speed and strength, great job!" He gave his foxy smile with his famous thumbs up.

Naruto was spotted in his room again, by this time. He was looking a picture of Team 7 before Sasuke left, he also looked at the pictures of his Human form. He wanted it back, he love his fox form as it blended him into this world, but he wanted to be human for a while again.

He looked at the picture and shed a few tears, "Don't worry guys, I will bring peace to this world, I will not let your Sacrifices be in vain. This world will know war again soon but after that true peace, not like Madara or Kaguya wanted. I will just need to be leader of the country, under my rule of love and power peace will be achieved."

His tears dripped from his cheeks, "I won't fall into hate like so many, I will stay one my path." His eyes hardened, "I will always protect my friends, My family. An this whole group is part of my Family, this world will soon be part of my family, I will bring everyone under my banner." Naruto smiled bright but his eyes were still hard, "An that's a Promise."

It had been a few weeks after Naruto's second bringing to the light, he was becoming more and more like he was before all this.

While the Akatsuki grew in the West it seemingly was frozen in the east, ponies assumed it was because of the vast desert between the West and The East, and the difficult crossing. Though the Akatsuki was still building it self strong. It still kept its actual power hidden, for a month it was a big deal and then it was never heard of again in the East coast. Perfect.