I in no way own Equestria Divided it belongs to Poor Yorrick, My Little Pony belongs to Laura Faust, Black Mesa game belongs to Crowbar Collaborative, and the Half Life games all belong to Valve. Non of this belongs to me it all goes to the respective owners I am just a fan who likes to play Half Life, Black Mesa, and reading fanfiction of MLP I only own the story that I am creating. (There will be areas where music from Black Mesa and Half Life will be played in certain chapters I leave links to where the music would go with the chapters)
Here are links for anyone who wants to know what Equestria Divided is about; I do not own the sites that I Link to my page so if so if someone wants me to take it down please me know and I will do so these are just so you can get an idea of what Equestria Divided is read what it is first before you read this story.

http://mlpfanart.wikia.com/wiki/Equestria_Divided
https://www.fimfiction.net/group/197422/equestria-divided
https://equestria-divided.deviantart.com/
http://total-war-equestria-divided.wikia.com/wiki/Total_War:_Equestria_Divided_Wiki

Somewhere during the mlp timeline in the late season 2 and early season 3 Celestia and Luna left Equestria and never came back, for unknown reason the Sun, Moon, and the Heavens above still move as they always have. Yet no one can explain why Celestia and Luna went missing. Unknown to the world they have been locked away by an enemy not of the world of Equis.

Equestria is now a nation torn apart by civil war and invasions, when Celestia and Luna went missing has left Equestria and many nations around Equestria and across the world in a state of total war, and chaos.

Equestria has been crippled from the Main Six falling apart and creating factions in attempt to take over what is left of Equestria. Shining Armor and princess Cadance both failed to even choose to take command of the Kingdom of Equestria thus dooming the nation two 15 years of war and terror. Equestria and all nations around it are at risk of wiping each other off of the face of the world of Equis. All nations have forgotten their gods and goddess whom are not at all pleased with this. All nations accept one hidden nation will pay the price for choosing to abandon their gods and goddess.

But the question that remains unanswered and everyone has wanted to know what or even who caused Celestia and Luna to go missing why do the sun and moon still move by themselves where are Celestia and Luna, why they have not come back, and what has happen to them?

But the answer will come to little to later for nations of the world, Celestia and Luna live but even they would not be able to stop what is coming, matter fact everyone in Equestria and nations of the world, are all out of time to see the real dark hours that are coming.

You believe the 15 year Faction War was horrible? Very soon you will see the faction wars are nothing compared to the real threat that is coming. Not even the dragons will be able to fight what is coming alone for they are not united themselves. For the ones who have locked Celestia and Luna away did so to weaken Equestria and all races of every faction, and nations across the world. Soon all races of the world will see their 15 years of war has left them open to a threat that has not been fought since the gods and goddess's themselves walked the world in their mortal form. All factions of Equestria Divided are doomed to lose.

The gods and goddess will not stop the conquering enemy that will come to Equis. For the races of the world during the 15 year Faction war abandoned the gods, some believing the gods do not exist, others that the gods are at fault for the war and chaos, or care not for the gods, cause they can now kill, and take whatever they want. Because of this the gods, and goddess's themselves will turn their backs on the races of Equis and leave them in the hands of their conquers.

The world will suffer for 5 years under enslavement. The races of the world in defeat will still try to fight back even then, but will still be unable to free themselves. The soon to be conquering enemy will attempt to strip Equestria and all nations of the world, of their magic, and magical artifacts, and no one can stop them from doing so. Even the villains and heroes of Equis will be out matched for alone they are nothing to the conquering enemy. Only united do they stand a chance yet someone must unit them together. After 5 years of struggle all races, heroes, and villains of the world will at long last turn back to their gods and cry or a hero to lead, free, and save them from those who conquer them. The gods, and goddess's, including the alicorn goddess creator of the universe will hear their cries for a hero to help them.

The chosen Hero will come from a nation created by the gods and goddess 300 years before the mlp timelines start, to save the world against the threat that comes to destroy, conquer, and take their magic, and magical artifacts. The nation that will free the planet with the chosen hero of the gods is the only nation not destroyed or even invaded or suffering, or declining, blessed by the gods and goddess with magic, weapons, and technology to drive back the conquers, and liberate Equestria, and all nations.

But what starts all this? It began in a nation that will fight the conquering threat to come when it is time. A nation hidden from Celestia for 300 years, and at a facility called Black Mesa 15 years ago before the Faction War. In a event known only as the Black Mesa Incident this is where our story begins. This is where agents sent by the conquering enemy to come begin their plans to takeover the world of Equis.

Heroes, villains, earth ponies, unicorns, bat ponies, pegasus, dragons, zebras, diamond dogs, yak, changlings, sea ponies, and all races living and undead, good and evil, will fall and fail to the conquers to come. Nations will surrender, be defeated, destroyed, plundered, and pillaged, and untold lives will be lost beyond the count of grief. Millions will die in the shortest war in history, billions of lives of every and all races whom had time to breed and grow as a race will be enslaved with seeming no hope for freedom again. The oceans will boil away and become polluted by acids, bio wastes, and poisons as the conquers will build a massive hydro power dam to block the ocean river of life and magic, in order to force the sea ponies on to land, and to make them submit while using the hydro dam to poison the worlds oceans. The land, and plant life will wither, die and overgrow, and yield only so much food. But the food supply in truth will not be as bad, the reality will be the conquers purposely give only so much food to the races of the world leaving the races of the world starving in order to force them to submit. Magic and magical artifacts will be stripped from much of the world of Equis, the Tree of Harmony will vanish as the goddess who created all the universe will send the Tree of Harmony to the nation that the chosen hero will come from. the gods and goddess's will have from the view of the races seem to have abandoned the world of Equis. People of all races will shed tears of grief and for a time will believe they will never be free, many will give up hoping, and all heroes and villains will feel like they are fighting a hopeless fight wondering if all they do will be worth it.

But in the dark hours of defeat, when their seems to be no light at the end of the tunnel. When all hope seems lost and crushed under the boots of the conquers. When the light of hope seems to fade. When the heroes of the world are unable to turn the tide against the powerful enemy. When even villains for all their powers cannot even deal a single blow to the conquering enemy and are force to hide.

A Hero chosen and blessed by the creator of all the universe, the gods and goddess's will rise and come when he is needed by the races of the world the most, unite and lead all the races of the world to victory against the conquering enemy. The light of hope shall never fade. For the right man in the wrong place can make all the difference in the world.